Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01768 and BPUM_0978
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:16
# Commandline: needle
# -asequence dna-align/BSNT_01768___comK.1.24716.seq
# -bsequence dna-align/BPUM_0978___comK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01768___comK-BPUM_0978___comK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01768___comK-BPUM_0978___comK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01768___comK
# 2: BPUM_0978___comK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 621
# Identity: 393/621 (63.3%)
# Similarity: 393/621 (63.3%)
# Gaps: 84/621 (13.5%)
# Score: 1177.0
#
#
#=======================================
BSNT_01768___ 1 ATGAGTCAGAAA--ACAGACGCACCTTTAGAATCGT-----ATGAAGTGA 43
|.|||||.|| |..||..||||||||||.||.| ||.|| |.|
BPUM_0978___c 1 --GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAA-TCA 47
BSNT_01768___ 44 ACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGACGGCAAAA---TC 90
| ||||||||.||.||.||.||.|..|| |||.||.|||| |.
BPUM_0978___c 48 A----GCAACAATGGCGGTCCTTCCGGTTGA---AGAAGGAAAAAGAGTA 90
BSNT_01768___ 91 TGTTCCAAAATTATTGAAAAAGATTGCGTG------TTTTATGTCAACAT 134
|.|||.|||.|.||.||||.||| | ||||||||..|..|
BPUM_0978___c 91 TATTCAAAAGTCATAGAAAGAGA------GACAAGCTTTTATGTTGAATT 134
BSNT_01768___ 135 GAAGCCGCTGCAAATTGTCGACAGAAGCTGCCGATTTTTTGGATCAAGCT 184
.||.||.|||||||||.|.||..|.|||||||||||.||.||.|||||||
BPUM_0978___c 135 AAAACCTCTGCAAATTATTGAACGCAGCTGCCGATTCTTCGGCTCAAGCT 184
BSNT_01768___ 185 ATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAG 234
||||.||.||||||||.|||||.||||||||.|||...|||||.||||||
BPUM_0978___c 185 ATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATTTCTCACAAG 234
BSNT_01768___ 235 CCGCCAATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACT 284
||.||.||..||.|.|||.|.||.|||||..|.|.|||.|||||.||...
BPUM_0978___c 235 CCTCCCATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTA 284
BSNT_01768___ 285 TTCTTCGACAA--GACCCCAATGCGGCTGGATTTCCCATGTGCATGTAAA 332
|||.|| ||| |.||.||.|||||||||||.||||| .||
BPUM_0978___c 285 TTCATC--CAATCGTCCTCAGTGCGGCTGGATCTCCCA---------CAA 323
BSNT_01768___ 333 AGA-ATTCAAAGCGAC--TGAAT------TCGACGATACGGAAGTGACGT 373
|.| |||||.|.|..| .|||| |||..||.||||..||.|..|
BPUM_0978___c 324 ATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCT 373
BSNT_01768___ 374 TTTCAAATGGGAAAAC----------GATGGAGCTGCCGATCTCTTATAA 413
||.||||||.|.|||| |||| ||||.|||||
BPUM_0978___c 374 TTACAAATGAGCAAACCGTCAAACTTGATG----------TCTCATATAA 413
BSNT_01768___ 414 TTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCC 463
.||.||.||||..|||||..|..|||||||||..||..||||.||.||.|
BPUM_0978___c 414 ATCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACAAAATTTC 463
BSNT_01768___ 464 AAGACAGAATCGACCACCGCGTG-----CCGAAAAGGCAGGAATTTATGC 508
||| ||||.|......||| ||.||||..||.||||||||||
BPUM_0978___c 464 AAG-----ATCGTCTTGATGGTGGTCTTCCTAAAAAACAAGAATTTATGC 508
BSNT_01768___ 509 TGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGT 558
||||.||.||||||.|.|.|...||..|..|.||.||||||||.||..|.
BPUM_0978___c 509 TGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGG 558
BSNT_01768___ 559 GAGCTCGGGGAGCGGTATTAG 579
|||||..||.|..|.|||||.
BPUM_0978___c 559 GAGCTACGGAACAGATATTAA 579
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