Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01756 and BPUM_0973
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:15
# Commandline: needle
# -asequence dna-align/BSNT_01756___yhfR.1.24716.seq
# -bsequence dna-align/BPUM_0973___yhfR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01756___yhfR-BPUM_0973___yhfR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01756___yhfR-BPUM_0973___yhfR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01756___yhfR
# 2: BPUM_0973___yhfR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 641
# Identity: 389/641 (60.7%)
# Similarity: 389/641 (60.7%)
# Gaps: 115/641 (17.9%)
# Score: 1018.5
#
#
#=======================================
BSNT_01756___ 1 ATGACAGCCGTTTGTTTAGTAAGACATGGAGAAACCGATTGGAACCTGCA 50
.|||||.|..||||..||||.|||||.||||||||.|||||||| ||||
BPUM_0973___y 1 TTGACAACAATTTGCCTAGTCAGACACGGAGAAACAGATTGGAA--TGCA 48
BSNT_01756___ 51 GCAAA---AATGCCAAGGCAAAACCGATATCCCGCTAAACGCAACAGGTG 97
||.|| ||| .|||||...|||.||||||||..||||.|..||.|||.
BPUM_0973___y 49 GCGAAACGAAT-TCAAGGACGAACAGATATCCCTTTAAATGATACTGGTA 97
BSNT_01756___ 98 AACGCCAAGCAAGAGAAACCGGAGAATATGTAAAGGACTTTTC---TTGG 144
||.|.||.||...|.||||.||....|||.||||.|| |.| ||||
BPUM_0973___y 98 AATGGCAGGCTGAACAAACGGGCCTTTATTTAAAAGA---TGCCCATTGG 144
BSNT_01756___ 145 GATATTATTGTGACGAGCCCGCTGAAAAGAGCGAAAAG-AACCGCGGA-- 191
|||.||.|..|..|.||.||.||.|.|||.|| ||||| |||.||..|
BPUM_0973___y 145 GATGTTGTCATTTCCAGTCCACTTACAAGGGC-AAAAGAAACAGCACACT 193
BSNT_01756___ 192 -AATTATTA----ATGAATATCTGCATCTTCCGATAGTCGAGATGGATGA 236
.||| ||| |||.|.||..||.|||| |||...||||||||
BPUM_0973___y 194 TGATT-TTAAAACATGTAGATGCGCCTCTT------GTCCTCATGGATGA 236
BSNT_01756___ 237 TTTTAAGGAACGCGATTACGGCGACGCGGAGGGCATGCCGCTGGAGGAAC 286
|||.|..||.||.|||||.|||||.||.||.||||||.|..|.|||||.|
BPUM_0973___y 237 TTTCATTGAGCGTGATTATGGCGATGCTGAAGGCATGTCATTTGAGGAGC 286
BSNT_01756___ 287 GGACAAAGCGCTATCCAGAT-AACATCTATCCGAATATGGAAAC-CTT-A 333
|...|||||..|.||||.|| |||| .|||||.||||||||..| ||| |
BPUM_0973___y 287 GTCAAAAGCTGTTTCCAAATAAACA-GTATCCAAATATGGAGCCGCTTGA 335
BSNT_01756___ 334 GAAGAACTCACTGACAGGCTGATGGGCGGTTTGGCAAAAGTGAACCAG-- 381
||.| |.||| .||..|..||.|.|..||..|.|.|||||| |||
BPUM_0973___y 336 GACG-ATTCA-AGATCGAATGGTAGAAGGCATTGAAAAAGT----CAGAG 379
BSNT_01756___ 382 --GCGTATCCAAA-CAAGAAGGTGCTGATCGTGGCGCACGGTGCGGCAAT 428
||.|||||||| |||.|| ||.||||||||.||.|||||.||.||.||
BPUM_0973___y 380 CAGCCTATCCAAATCAACAA-GTCCTGATCGTAGCACACGGCGCTGCCAT 428
BSNT_01756___ 429 -----------TCACGCCCT--GCTGACAGAA-ATATCCGGCGGTGACCC 464
||||..||| ||||| .||| ||.| |||
BPUM_0973___y 429 CCATGCTTTGCTCACCACCTTAGCTGA-TGAACATTT------GTG---- 467
BSNT_01756___ 465 GGAGCTTCAAAGCACCCGTCTCGTCAACGCCTGCCTCAGCAACATTGAAT 514
.|||.|.|.|||..|.||||||||.||.||| ||.|||
BPUM_0973___y 468 ---TCTTGAGAACACGAGACTCGTCAATGCTTGC----------TTAAAT 504
BSNT_01756___ 515 T-TGCAGAA--GAAAAATGGCGGATAAA-----------AGACTATAATA 550
| ||..||| ||||.|||| |||| .||.||.|||.
BPUM_0973___y 505 TATGTGGAATGGAAAGATGG----TAAATGGAAGGTGCTTGATTACAATG 550
BSNT_01756___ 551 TCAACAGCCACTTA---------TCCGGCTTTATCAAATAA 582
|...||||||.||| ||| |.||.|.||
BPUM_0973___y 551 TGGTCAGCCATTTAACTCAATCCTCC--CCTTCTTAA---- 585
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