Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01743 and BPUM_0969
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:15
# Commandline: needle
# -asequence dna-align/BSNT_01743___yhfL.1.24716.seq
# -bsequence dna-align/BPUM_0969___lcfA1.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01743___yhfL-BPUM_0969___lcfA1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01743___yhfL-BPUM_0969___lcfA1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01743___yhfL
# 2: BPUM_0969___lcfA1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1732
# Identity: 1036/1732 (59.8%)
# Similarity: 1036/1732 (59.8%)
# Gaps: 320/1732 (18.5%)
# Score: 2753.5
#
#
#=======================================
BSNT_01743___ 1 TTGGCTTCAATAATGAATGACTATTCATTCACTTTAAGGGGTGGGAGAAT 50
||
BPUM_0969___l 1 ------------------------------------------------AT 2
BSNT_01743___ 51 GAATCTTGTTTCAAAA--TTGGAAGAAACAGC-ATCTGA-GAAGCCCGAC 96
|.|| ||| .|||||| .|.||..|.||.|| | ||| ||||...||
BPUM_0969___l 3 GGAT-TTG-ATCAAAAACCTAGAGCAGACGGCGA--TGACGAAGAGAGA- 47
BSNT_01743___ 97 AG-CATCGCA-TGCAGGTTTAAAG---ATCACATGATGACGTATCAAGAG 141
|| .|||||| || |..|||.||| |||| ||||||.||||.||||
BPUM_0969___l 48 AGATATCGCACTG-ATCTTTGAAGGAAATCA---GATGACCTATCGAGAG 93
BSNT_01743___ 142 CTGAATGA-ATATATTCAGCGATTTGCGGACGGCCT--TCAG-GAGGCCG 187
|| .|||| |..|||..||||.|||||.||.|||.| |.|| ||.| |
BPUM_0969___l 94 CT-CATGACAAGTATCGAGCGCTTTGCAGATGGCTTAGTTAGCGAAG--G 140
BSNT_01743___ 188 GTATGGAGAAAGGGGACCATCTAGCTTTGCTGCTT---GGCAATTCGCCT 234
|| |..||...|||||.|||||.|| |||..|| ||.|||||.||.
BPUM_0969___l 141 GT-TTCAGGCTGGGGATCATCTTGC---GCTTATTTTAGGAAATTCACCG 186
BSNT_01743___ 235 GATTTTATCATCGCGTTTTTTGGCGCTTTAAAAGCTGGGATCGTGGTTGT 284
.|||||.||||..|.||||||||.||.|||||.||.|||.|.||.||.||
BPUM_0969___l 187 CATTTTGTCATTTCTTTTTTTGGTGCCTTAAAGGCAGGGCTTGTCGTAGT 236
BSNT_01743___ 285 TCCCATCAATCCGTTGTACACGCCGACAGAAATTGGTTATATGCTGACAA 334
.||.||||||||....||||||||.|..||||||||.||||||||||..|
BPUM_0969___l 237 ACCAATCAATCCAACATACACGCCTAGTGAAATTGGGTATATGCTGATTA 286
BSNT_01743___ 335 ATGGCGATGTAAAGGCGATCGTGGGCGTTAGC-CAGCTTTTGCCGCTTTA 383
..||.||||||||.|.|||.||.|.|..| || |||||..||||..|.||
BPUM_0969___l 287 CAGGTGATGTAAAAGGGATTGTTGCCCCT-GCACAGCTACTGCCAGTGTA 335
BSNT_01743___ 384 TGAGAGCA--TGCATGAATCGCTGCCAAAGGTTGAGCT--CGTCATTTTA 429
.||||| ||.|.||| ||| || ||||..||.|
BPUM_0969___l 336 --CGAGCAGGTGTACGAA-------CAA--------CTTCCGTCTATTGA 368
BSNT_01743___ 430 TGCCAGACGGGGGA-------GGCAGAGCCGGAAGCTGCG----GACCCA 468
|||||.|| .|||||....|||.||||| ||.|.|
BPUM_0969___l 369 ------ACGGGTGATTATTTGTGCAGAAAATGAATCTGCGTGCAGATCAA 412
BSNT_01743___ 469 GAGGTCAGGATGAAAATGA-CAAC-------GTTTGCAAAAATATTGCGG 510
|...|.||||.|.|...|| |||| .||||.|||..|..||
BPUM_0969___l 413 GTTTTAAGGAAGTAGCAGATCAACTTGTCTTCTTTGGAAAGCTTGTG--- 459
BSNT_01743___ 511 CCGACATCTG---CTGCTAAACAAAACCAAGAACTTG--TCCCT------ 549
|||| .|||.||| .|||||.|| |||.|
BPUM_0969___l 460 ------TCTGGTCATGCGAAA-------GAGAACGTGCATCCTTCTATTC 496
BSNT_01743___ 550 -----GATGATACCGCGGTTATTTTATATACGTCAGGAACGACTGGAAAA 594
||||||||.||.||||||||||.|||.||.||.|||||.||||||
BPUM_0969___l 497 ATCAGGATGATACGGCAGTTATTTTATTTACATCTGGCACGACAGGAAAA 546
BSNT_01743___ 595 CCGAAAGGCGCAATGCTGACTCATCAGAATTTGTA--CAGCAATGCCAAC 642
||.||.||.|||||||||||||||...||..|||| || |||||.|..
BPUM_0969___l 547 CCAAAGGGTGCAATGCTGACTCATTTCAACCTGTATTCA--AATGCTAGA 594
BSNT_01743___ 643 GATGTCGCAGGCTATTTGGGAATGGATGAGAGGGACAATGTGGTC--TGC 690
|||||.||.|..|||.|....||.|||||.|.|||||| |||| |||
BPUM_0969___l 595 GATGTTGCTGAGTATCTATCCATTGATGAAAAGGACAA---GGTCATTGC 641
BSNT_01743___ 691 -GCTCTTCCCATGTTTCACGTGTTTTGTTTAACCGTCTGTATGAATGCAC 739
||..|.||.|||||.|||||.|||||||||||.||.|||||||||||||
BPUM_0969___l 642 TGCATTGCCGATGTTCCACGTATTTTGTTTAACAGTTTGTATGAATGCAC 691
BSNT_01743___ 740 CGCTGATGAGCGGCGCAACTGTCT-TGATTGAGCCTCAATTCAGTCCGGC 788
|..||||....|||||.||..|.| || ||...||.||.|||||.| |
BPUM_0969___l 692 CATTGATTCATGGCGCGACCATTTATG-TTCTACCGCATTTCAGCC---C 737
BSNT_01743___ 789 ATCTGTTTTTAAGCTTGT---TAGGCAGCAGCAGGCG--ACCA----TTT 829
|||.| |||||.| ||.|..|.|..|.|.| |||| |.|
BPUM_0969___l 738 ATCAG------AGCTTTTGCGTATGATGGAAAAAGAGAAACCAACGTTAT 781
BSNT_01743___ 830 TTGCCGGTGTGCCTACAATGTATAACTACTTGTTTCAGCATGAAAACGGA 879
|||..|||||.||.||.|||||||||||.||||.||..||.||| ||.
BPUM_0969___l 782 TTGTTGGTGTTCCGACCATGTATAACTATTTGTATCGACAGGAA---GGG 828
BSNT_01743___ 880 AAGAAAGATGATTTTTCTTCGATCCGGCTGTGCATTTCGGGAGGCGCGGC 929
.|..|.||||...|.||.||..|..||.|.||.||.||.||.||.||..|
BPUM_0969___l 829 CATGAGGATGCGATGTCCTCTGTGAGGATTTGTATATCAGGCGGTGCCTC 878
BSNT_01743___ 930 CATGCCAGTCGCGTTGC-TGACGGCGTTTGAAGAAAAATTCGGTGTTACC 978
.|||||.||.||.||.| |.|||| .|||||..|||||||.|||||.||.
BPUM_0969___l 879 AATGCCTGTTGCTTTACTTCACGG-TTTTGAGAAAAAATTTGGTGTCACG 927
BSNT_01743___ 979 ATTTTGGAAGGCTACGGGCTCTCGGAAGCATCACCCGTCACGTGC-TTTA 1027
.|..||||.||.|||||..|.||.|||||.||.||.||.|| ||| ||.|
BPUM_0969___l 928 GTACTGGAGGGTTACGGATTATCAGAAGCTTCTCCAGTAAC-TGCATTCA 976
BSNT_01743___ 1028 ACCCGTTTGACAGGGGCAGGAAGCCGGGCTCCATCGGGACAAGTATCTTA 1077
|.||..||||..|....||.||.||.||.||..|.|||||....||..|.
BPUM_0969___l 977 ATCCTCTTGATGGAAAAAGAAAACCCGGTTCAGTGGGGACCGACATTATG 1026
BSNT_01743___ 1078 CATGTCGAA-AACAAGGTCGTAGATCCGCTCGGACGCGAGCTGCCCGCTC 1126
.|||| ||| ||.|||.|.||..||...||.|||...||..| ||.||
BPUM_0969___l 1027 AATGT-GAAGAATAAGATTGTGAATGAACTAGGAGAAGAAGT---CGGTC 1072
BSNT_01743___ 1127 ---ACCAGGTCGGCGAATTGATCGTGAAAGGCCCCAATGTGATGAAGGGC 1173
|..|.|||||.||..|.||.|..|||||.|||||..|.|||||.|||
BPUM_0969___l 1073 CAAATGAAGTCGGAGAGCTCATAGCAAAAGGACCCAACATTATGAAAGGC 1122
BSNT_01743___ 1174 TATTATAAAATGCC-GATGGAAACAG-AGCATGCATTAAAAGACGGGTGG 1221
||||||.||||||| || .||.||.| ||| ||||.|||.||||||||||
BPUM_0969___l 1123 TATTATCAAATGCCAGA-AGATACTGAAGC-TGCACTAAGAGACGGGTGG 1170
BSNT_01743___ 1222 CTTTATACGGGGGACTTGGCAAGACGGGATGAGGACGGCTATTTTTACAT 1271
||.||.||.||.||.||.||.|||.|.|||||.||.||.||..||||.||
BPUM_0969___l 1171 CTGTACACTGGCGATTTAGCGAGAAGAGATGAAGAAGGATACATTTATAT 1220
BSNT_01743___ 1272 TGTTGACCGGAAAAAAGACATGATCATTGTAGGAGGATACAATGTGTATC 1321
|||.||.||.|||||.||.|||||..||||.||.||.||.||||||||||
BPUM_0969___l 1221 TGTCGATCGAAAAAAGGATATGATTCTTGTTGGCGGTTATAATGTGTATC 1270
BSNT_01743___ 1322 CGCGGGAGGTGGAGGAGGTGCTGTA-CAGCCATCCGGACGTCAAG----- 1365
|..|.||.||.||.||.|||||.|| || ||.|.|||
BPUM_0969___l 1271 CAAGAGAAGTAGAAGAAGTGCTTTATCA---------ACATGAAGCTGTA 1311
BSNT_01743___ 1366 ---GAGGCGGTTGTCATCGGCGTGCCGGACCCCCAAAGCGGGGAAGCGGT 1412
||.||.|||||||||||.|||||.||.|...|.|.|||.||.||
BPUM_0969___l 1312 GCAGAAGCTGTTGTCATCGGTGTGCCAGATCAGAACACCGGAGAGGC--- 1358
BSNT_01743___ 1413 AAAGGGATATGTGGT------------GCC---GAAAC--GCTCTGGGGT 1445
|||.|| .|| ||||| ||||
BPUM_0969___l 1359 ---------TGTCGTCTGTTACATTTCCCCTAAGAAACATGCTC------ 1393
BSNT_01743___ 1446 AACA-----GAGGAGGACATCATGCAGCAC--TGTGAAAAGCA-----TC 1483
||| .|.||.|||||||| || ||| ||| .|| |.
BPUM_0969___l 1394 -ACATCGATCAAGAAGACATCAT-CA-CACATTGT-----TCACGCTTTT 1435
BSNT_01743___ 1484 TGGCAAAATACAAGCGGCCTGCCGCCATTACG-----TTTC-TTGACGAT 1527
|.||.|||||.||||.||| ||| .||| |||| |.||.|||
BPUM_0969___l 1436 TAGCGAAATATAAGCAGCC-----CCA-AACGATCCATTTCATAGATGAT 1479
BSNT_01743___ 1528 ATTCCGAAAAATGCGACGGGGAAAATGCTCAGACGGGCACT----GAGAG 1573
|||||.||.||..|.||.||.|||||..|.|||.|.||||| ||.|.
BPUM_0969___l 1480 ATTCCAAAGAACACAACAGGTAAAATTTTAAGAAGAGCACTAAAGGAAAA 1529
BSNT_01743___ 1574 ATATTTTGCCCCAA-----------TAA---- 1590
.||| ||| |||
BPUM_0969___l 1530 GTAT-------CAAGCAGAGGAAAGTAAATAA 1554
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