Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01730 and BPUM_0962
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_01730___yhgE.1.24716.seq
# -bsequence dna-align/BPUM_0962___yhgE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01730___yhgE-BPUM_0962___yhgE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01730___yhgE-BPUM_0962___yhgE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01730___yhgE
# 2: BPUM_0962___yhgE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2561
# Identity: 1560/2561 (60.9%)
# Similarity: 1560/2561 (60.9%)
# Gaps: 484/2561 (18.9%)
# Score: 4104.5
#
#
#=======================================
BSNT_01730___ 1 ATGAACACAATACGAAGTCAGTGGAAAGACATCGTAACAAGTAAAAAATT 50
|||||...|||.||.|.|||.|||||||||||.|||||.||.||||||.|
BPUM_0962___y 1 ATGAATTTAATTCGGAATCAATGGAAAGACATTGTAACGAGCAAAAAACT 50
BSNT_01730___ 51 ATTGATTCCCATCATCGCCATTTTGTTTGTCCCGCTTATTTACAGCGGCG 100
|.||||.||.||..|.||..|.||.|||.|.|||||.||||||||.||.|
BPUM_0962___y 51 ACTGATCCCGATTTTAGCTGTCTTATTTATTCCGCTGATTTACAGTGGTG 100
BSNT_01730___ 101 TATTCTTAAAGGCTTATTGGGACCCGTACGGCACAGTTGACCAGCTGCCT 150
||||.|||||.||.||.||||||||.||.||.||||||||.||..|||||
BPUM_0962___y 101 TATTTTTAAAAGCGTACTGGGACCCTTATGGTACAGTTGATCAATTGCCT 150
BSNT_01730___ 151 GTCGTTGTCGTCAACCAAGA-CAAGGGAG-CAACGTATGAAGGAGAAAA- 197
||.|..||.||||||...|| .||||.|| || .||.||.|| |||||
BPUM_0962___y 151 GTGGCGGTTGTCAACTTGGATGAAGGCAGTCA--TTACGACGG-GAAAAC 197
BSNT_01730___ 198 ACTTCAAATCGGTGATGATCTGGTCAAAGAATTAAAGGATAATAACAACT 247
.||||||.||||.||||||.|.||.||.|||||||||.|.||..||||.|
BPUM_0962___y 198 CCTTCAAGTCGGCGATGATTTAGTAAAGGAATTAAAGAAAAACGACAATT 247
BSNT_01730___ 248 TTGATTGGCATTTTTCCAATGATCTCGACCAATCGTT-AAAGGACTTATT 296
|..|.|||.|||||..|.||..||..|||.|..|||| ||||| |||
BPUM_0962___y 248 TCAAATGGAATTTTGTCGATAGTCATGACAAGGCGTTAAAAGG----ATT 293
BSNT_01730___ 297 GAATCAAA-----AATATTATTTAGTTGTCGAGATTCCTGAGGATTTTTC 341
.||| || |.||||||.|.|||||.||.||.||..||||.||.||
BPUM_0962___y 294 AAAT--AACGAGGACTATTATCTCGTTGTGGAAATACCAAAGGACTTCTC 341
BSNT_01730___ 342 TAAGAATGCCAGCACCGTGTTGGACAAAAATCCAAAAAAATTGGATCTGA 391
.||.|||||.||.||.|||.|.||.|||.||||.|||||||.|.||||||
BPUM_0962___y 342 GAAAAATGCAAGTACAGTGCTAGAGAAACATCCGAAAAAATCGAATCTGA 391
BSNT_01730___ 392 AATACCATACAAATGCCGGTTCCAACTATGTAGGGGCAACGATCGGTGAA 441
||||..||||.|||.|.||..||||||||| .||.|..||.|...|.|||
BPUM_0962___y 392 AATATTATACGAATCCGGGCGCCAACTATG-CGGCGTCACAAATTGCGAA 440
BSNT_01730___ 442 -AAAGCGATTGAT-AAACTGAAAGCTTCTGTTTCTAAAGAAGTGACAGAG 489
||.||.||| || |||.|.||||.|||.|||||.||.|||||.|||.|
BPUM_0962___y 441 TAATGCCATT-ATCAAATTAAAAGATTCGGTTTCAAAGGAAGTCACAAA- 488
BSNT_01730___ 490 CAATATACG--AAAGTTATTTTTGATAACTTTAAAGATATCGCAAAAGG- 536
||..|||| .|.||.||.|||||||||||.|||...||.||||||||
BPUM_0962___y 489 -AAATTACGCCGAGGTCATCTTTGATAACTTCAAAACCATTGCAAAAGGA 537
BSNT_01730___ 537 TTTGAGCGACGCGAGCAGCGGCGCGAAAAAAATTGATGACGGCACAAAGG 586
||.||.| |.||.|||...||||||||.||||||||||||||.|||||
BPUM_0962___y 538 TTAGATC-AAGCAAGCGATGGCGCGAAGAAAATTGATGACGGAACAAA-- 584
BSNT_01730___ 587 ATGCG--AAAAACGGAAGCGCACAGCTGAAAGAAAATCTGGCGA----AG 630
|.||| |||.|.||.||..|..||.|.|||||.||..|.||.| ||
BPUM_0962___y 585 AAGCGCAAAAGATGGCAGTACGAAGTTAAAAGACAACTTAGCCAAATTAG 634
BSNT_01730___ 631 CTGAAGGAAAGCACCGCTACCATCAGTGACAAAACAGCG----------- 669
||||.||.| |.|||.|.| |.||||
BPUM_0962___y 635 CTGAGGGTA-----CACTAACCT----------ATAGCGAAGGGGTTCAT 669
BSNT_01730___ 670 CAGCTTGCAG-----ATGGAGCGGCTCAGGTGA--CGAGC---GGCATCC 709
|||.|.|||| ||| ||||| .||.| |||||.|
BPUM_0962___y 670 CAGTTCGCAGGGAAAATG----------GGTGAACTGAACACAGGCATAC 709
BSNT_01730___ 710 AATCACTTGATAGCTCGCTCGGTAAATTCCAG-----GACAGCAGCAACC 754
|.||.||.||.||...|||.||| ||| .|||| ||.|.|
BPUM_0962___y 710 AGTCTCTAGACAGTGGGCTTGGT------CAGCTTTTAACAG--GCTATC 751
BSNT_01730___ 755 A---GATTTATGATAAATCTAGTCAGCTTGCAGCAGGATCAGGCAA--GA 799
| ||||.||.|.||||.|.|..||||| ||.||||| || ||
BPUM_0962___y 752 AAACGATTGATCAGAAATTTGGAGAGCTT------GGTTCAGG-AATTGA 794
BSNT_01730___ 800 TAACGGGCA--AGCTGAA----TGAACTGAATGCCGGCCTTCAAAAGG-- 841
|| || |.|.||| |||||..|| |||| |.||||
BPUM_0962___y 795 TA-----CATTAACCGAAGGGTTGAACACAA-GCCG------AGAAGGAC 832
BSNT_01730___ 842 -TGCAGCAGGGCTTGC--CTAATCTGACA--------AACGGGC-TGGAT 879
| ||||| |||.|| ||||..||.|| |.|.||| |.||.
BPUM_0962___y 833 AT-CAGCA--GCTCGCTTCTAAAATGCCACAATTCACAGCAGGCATTGAG 879
BSNT_01730___ 880 CAGCTCAACAGTAAAGCGCAAGAAGGTTCTGAGAAA---GCAGCAAAAGC 926
|||||.||||..|||||.|||.....|||.||.||| ||||| ||.
BPUM_0962___y 880 CAGCTGAACAACAAAGCACAATCTTTTTCAGAAAAAATTGCAGC---AGT 926
BSNT_01730___ 927 GGAAAAA--CTTATAAATGCGCTC----GATTTAACGAAGCTTGAAACAG 970
.|||||| ||||| || || ||.|||.||||.||||||| ||
BPUM_0962___y 927 AGAAAAAGTCTTAT-----CG-TCACCAGAATTAGCGAATCTTGAAA-AG 969
BSNT_01730___ 971 CT-GTGAATAACCTCGAAAAGTCAG----AAACAGCGATGAAGGAA--TT 1013
.| |.|..|||.||||| |||| |||.| ||.|.|..|| ||
BPUM_0962___y 970 ATGGCGCCTAAACTCGA----TCAGGTGAAAAAA--GACGCAAAAACGTT 1013
BSNT_01730___ 1014 ---TAAAAAAC-AGCTGTCTGACTTTGAAAA-CAGC-TTAAAAAACCGTG 1057
||.||||| .||| |.||| |||| .||| |||..|||.||.|
BPUM_0962___y 1014 CAGTACAAAACTTGCT---TCACT---AAAAGAAGCATTATCAAATCGAG 1057
BSNT_01730___ 1058 AT----------CAGGCATT---CAAAAATCTCATCAACTCGAGTGATTT 1094
|| .|.||||| ||||| ||.|||.|
BPUM_0962___y 1058 ATGCGAAAGTAAAAAGCATTATCCAAAA-------CAGCTCTA------- 1093
BSNT_01730___ 1095 CTTAACA---GCAGAGCAAAAAAGC--CAGTTGATCAGCTCTGTTGAAAA 1139
|.||| |.|||| |||||.|| ||...|||||||| ||
BPUM_0962___y 1094 --TGACAGATGAAGAG-AAAAAGGCGGCAACAGATCAGCT--------AA 1132
BSNT_01730___ 1140 GCAG-CTTCCGAAAGTTGATGCGCCTGAT---------TTTGATGAAATT 1179
.||| ||.||.|||.|.||...||||||| .|.||..|||..
BPUM_0962___y 1133 ACAGTCTGCCTAAAATCGAACTGCCTGATCTGTCTGGACTCGAACAAAGC 1182
BSNT_01730___ 1180 TTAAGTGGGCTTCCTT-CAGCTGATCAGCTGCCTGACATCGCAA------ 1222
||| ||..|||| ||| .|.|||||||| .||||
BPUM_0962___y 1183 TTA-----GCGGCCTTGCAG-----GAACTGCCTGA---TGCAAGTGAGG 1219
BSNT_01730___ 1223 --CGATAAAAAGCTCATTGGAAGATGTG--AAAGCGCAGGTTGC-CCAGG 1267
|.||.|..|| ||| .||.|| |||||||| |.||| .||.|
BPUM_0962___y 1220 TTCAATCAGCAG----TTG---CATCTGCAAAAGCGCA-GCTGCAGCAAG 1261
BSNT_01730___ 1268 TGAA--GGCATTGCCGGA-----------AGCT----ACCTCTAAACTTT 1300
|.|| .|| ||||.|| |||| ||.||||.|
BPUM_0962___y 1262 TCAAACAGC--TGCCTGAGAAAACAGAACAGCTGTACACGTCTACA---- 1305
BSNT_01730___ 1301 ATAACGGCGCAAAAGCCACTCAAGACGCGATTGA-CAAATTAACTGCTGG 1349
|.|||.|.| |||.|.|||||.|| |||| |.||..||||
BPUM_0962___y 1306 -----GTCGCGATA------CAAAATGCGATCGATCAAA-TGACATCTGG 1343
BSNT_01730___ 1350 ATCTGAGAAATTATA-CAATGCGTCACAGCAGGT---GACAGATGGCCAA 1395
..|..|.|||||.|| |||.|.| |||.|.||.| .||| ||.|||
BPUM_0962___y 1344 TACGAATAAATTGTATCAAGGTG-CACTGAAGCTTCAAACA---GGTCAA 1389
BSNT_01730___ 1396 ACTAAACTGAC-AGCCGGCATCGGTGAATATAATAAGCAGTTCGCAAA-- 1442
..|.|| |.|| ||..||..||| ||..||||..|.|.|||
BPUM_0962___y 1390 GGTCAA-TTACAAGATGGTCTCG--------AAACAGCAAATGGAAAACT 1430
BSNT_01730___ 1443 ------GGC-AAAAGCG----GGCTCAG--AGCAATTGGTGACAGGAAG- 1478
||| ||||||| ||.|.|| .||.|.||| |..|||
BPUM_0962___y 1431 TGATACGGCGAAAAGCGGAGCGGATAAGCTTGCCAATGG----ATCAAGT 1476
BSNT_01730___ 1479 CAGCCAAGTATCCGGCGGATTGTT---TAAGCTGTTAGA---CGGGTCTA 1522
||||..| |||.|..||| ||||| |||| .||.||.|
BPUM_0962___y 1477 CAGCTTA-------GCGCAGCGTTAAATAAGC---TAGAAAGTGGTTCAA 1516
BSNT_01730___ 1523 AACAGGTCCAAAGCGGAT-CATCAAAACTGGCAGACGGATCTGCATCACT 1571
.|.|..|||||||| .|| ||||.||.||.||.||.||.||...||||||
BPUM_0962___y 1517 CAAATATCCAAAGC-AATACATCTAAGCTTGCCGAAGGCTCAAAATCACT 1565
BSNT_01730___ 1572 TGATACAGGTTTAGGCAAGCTGTT---GGACGGCACAGGAGAGCTGTCTA 1618
|||||.|||.|||| |||.| || |..|||.|||||..|.|||||.|
BPUM_0962___y 1566 TGATAAAGGATTAG--AAGAT-TTAAAGAGCGGTACAGGTAAACTGTCCA 1612
BSNT_01730___ 1619 GTAAGCTGAAGGATGCG--GCTGACCAAACAGGAGATATCGATGCTGATG 1666
.|||..|||| |.||| |||||..|||||||..|.||.||||| ..
BPUM_0962___y 1613 ATAAATTGAA--AAGCGCTGCTGATGAAACAGGTAAAATTGATGC---AA 1657
BSNT_01730___ 1667 ATCAA-ACA--TATGGCATGTTTGCGGATCCGGTAAAAACCAAAGATGAT 1713
||||| ||| ||...||||.||||....||.||.|||||..||.|.|||
BPUM_0962___y 1658 ATCAAGACAATTACAACATGATTGCAAGCCCTGTTAAAACAGAAAACGAT 1707
BSNT_01730___ 1714 GC---------CATTCATTCCGTTCCTAACTACGGTACAGGGCTGACACC 1754
.| .|||.| |||.||.||.||||||||.||.||
BPUM_0962___y 1708 ACAGCGAAAAAGATTGA---------TAATTATGGAACAGGGCTCACGCC 1748
BSNT_01730___ 1755 TTATATCCTGTCAATGGGCTTATATGTCGGCGGC-ATCATGCTGACGGTT 1803
||||||..|.||.|||||..|.|.|||.|| ||| .|||||||.||.|||
BPUM_0962___y 1749 TTATATTTTATCGATGGGACTCTTTGTTGG-GGCTCTCATGCTCACCGTT 1797
BSNT_01730___ 1804 GTCTTCCCGCTGAAGGAAGCGTCAGGACGTCCGAGAAATGGTTTTGAGTG 1853
||.|||||..||||.||..|..|.||.||.||.|||||||..|||||.||
BPUM_0962___y 1798 GTATTCCCAATGAAAGACCCTGCTGGCCGCCCTAGAAATGCGTTTGAATG 1847
BSNT_01730___ 1854 GTTCTTCAGCAAATTCAATGTCATGATGCTTGTAGGAATCATTCAATCAT 1903
|||..|||||||||..|.|||..|..|||||||.||.|||.|||||.||.
BPUM_0962___y 1848 GTTTGTCAGCAAATATAGTGTGCTTCTGCTTGTTGGTATCCTTCAAGCAG 1897
BSNT_01730___ 1904 TGATTGTGGCGACGGT-------TCTTCTTCTGGGAATTGGTCTCGAGGT 1946
|.||| ||.| || ||.|||| |||| .|||||||.|||||
BPUM_0962___y 1898 TCATT---GCAA--GTACAATGCTCATCTT-TGGG-CTTGGTCTTGAGGT 1940
BSNT_01730___ 1947 TGAGAGCACGTGGAGATTTTACGTGTTTACGATTATTACG--AGTCTCGC 1994
.||.|||...|||.|.||.||..|.|||.||||..| || |||||..|
BPUM_0962___y 1941 GGAAAGCCTCTGGCGCTTCTATCTCTTTGCGATCGT--CGTCAGTCTGAC 1988
BSNT_01730___ 1995 TTTCCTGGCAATGATTCAATTTTTGGCCACGACAATGGGCAACCCGGGAC 2044
.|||.|.||.||.|||||..|..|.||.||.||||||||.|||||.||||
BPUM_0962___y 1989 ATTCTTAGCGATTATTCAGCTGCTAGCGACAACAATGGGGAACCCAGGAC 2038
BSNT_01730___ 2045 GATTTATCGCAGTCATTATTTTAGTGCTGCAGCTGGGAGCAAGCGGAGGA 2094
|.||.||.||.||||||||.|||||.||.|||||.|.||||||.|..||.
BPUM_0962___y 2039 GCTTCATTGCCGTCATTATCTTAGTTCTTCAGCTCGCAGCAAGTGCTGGC 2088
BSNT_01730___ 2095 ACCTTCCCGCTTGA-ATTGCTCCCGAATTTCTATCAGGTCATCCATGG-- 2141
||.||||||||||| .||| |.|||||.||||..||.|||||.|||.|
BPUM_0962___y 2089 ACATTCCCGCTTGAGCTTG-TACCGAAATTCTTCCAAGTCATTCATAGTC 2137
BSNT_01730___ 2142 CGCATTGCCGATGACCTACAGCATTAACGGATTCAGAGCGGTCATTTCAA 2191
.|| |.||.|||||.||.|..||.||.|||||.|||.||.|||||.|||
BPUM_0962___y 2138 TGC--TTCCAATGACGTATACGATCAATGGATTTAGAACGATCATTGCAA 2185
BSNT_01730___ 2192 ACGGTGACTTTGGCTACATGTGGCA---------GATGGCCGGCGTCTTA 2232
.||||||...|.||||..|.||||| ||| ||||
BPUM_0962___y 2186 GCGGTGATGATAGCTATTTATGGCACCAAGCAGCGAT--------TCTT- 2226
BSNT_01730___ 2233 ATCGGCA---TCGCCCTCGTCATGATTGC-------ACTAAGCATTACTT 2272
||.| |.||..||.|||||||.|| ||| ||| |
BPUM_0962___y 2227 ---GGTACAGTTGCGATCATCATGATGGCGGCAACAACT--GCA-----T 2266
BSNT_01730___ 2273 ACTTTACAATGTT--AAGCCGGAAGGAA---GAAACATCAGAAGAACAGC 2317
|||||.| || || ||.|||.|| |||||| |||.|||
BPUM_0962___y 2267 ACTTTGC----TTGGAA--CGTAAGAAAAATGAAACA--AGACGAA---- 2304
BSNT_01730___ 2318 GGGCTTCATAA 2328
||||.|
BPUM_0962___y 2305 --GCTTAA--- 2310
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