Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01729 and BPUM_0961
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:14
# Commandline: needle
# -asequence dna-align/BSNT_01729___yhgD.1.24716.seq
# -bsequence dna-align/BPUM_0961___yhgD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01729___yhgD-BPUM_0961___yhgD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01729___yhgD-BPUM_0961___yhgD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01729___yhgD
# 2: BPUM_0961___yhgD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 614
# Identity: 421/614 (68.6%)
# Similarity: 421/614 (68.6%)
# Gaps: 73/614 (11.9%)
# Score: 1355.0
#
#
#=======================================
BSNT_01729___ 1 ----ATGTCAATAGATCGA-AAAAAGCTCATTTTGGAGGCGGCTAC-AAA 44
.|||..|||| || |.||| |.|||||.||.|..||.|| |||
BPUM_0961___y 1 ATGAGTGTTGATAG---GAGACAAA--TGATTTTAGATGGTGCGACGAAA 45
BSNT_01729___ 45 GTCTTTCACGCAGTTCGGGTATAAAGCGACGACAATGGATCTTGTCGCAA 94
| |.||.||.||.|||||.|||||||||||.||||||||.|||||.||||
BPUM_0961___y 46 G-CATTTACTCAATTCGGATATAAAGCGACCACAATGGACCTTGTGGCAA 94
BSNT_01729___ 95 AACTTGCGAACGTGGGGAAGGGAACCATTTATACTTTTTTCAAAAACAAA 144
|.|||||.||.||.||.||.||||||||||||||.|||||||||||||||
BPUM_0961___y 95 AGCTTGCCAATGTCGGAAAAGGAACCATTTATACATTTTTCAAAAACAAA 144
BSNT_01729___ 145 GAAGAGCTGTTTGACGAGATTTTCACTAC---TTTATTAAAGGAAATGAA 191
||||||.||||.||.||.||||||||..| ||||.|| ||.||||.
BPUM_0961___y 145 GAAGAGTTGTTCGATGAAATTTTCACATCCCTTTTACTA---GAGATGAG 191
BSNT_01729___ 192 GCAAAAAGCGGATGAAGC----GATGGAGCCGAACCTTCCGTTC-CATGA 236
|.|||..||||||||||| ||| |||..||| |...||| || ||
BPUM_0961___y 192 GAAAATTGCGGATGAAGCAATTGAT-GAGAAGAA---TAGTTTCTCA-GA 236
BSNT_01729___ 237 AAATGTGCACAGAGCGCTGTTTGCCATTCTGGAGTTCAGGAAAACACATC 286
|||..|.|||..|||.||.|||||.|||.|.||.||..|.||||..||.|
BPUM_0961___y 237 AAACCTTCACTTAGCACTCTTTGCAATTTTAGAATTTCGAAAAAACCACC 286
BSNT_01729___ 287 AGCTGACGATTAAAATTTTCCAAGAGAATGCCGAGATTGGTACAATGGCA 336
||||.||.|||||.|||||.||.||.|||||.|||.||||.||....|||
BPUM_0961___y 287 AGCTCACAATTAAGATTTTTCAGGAAAATGCGGAGCTTGGCACGTCAGCA 336
BSNT_01729___ 337 GTTCAGGAAGTGATCCAGAAAATGGAGCGAG----CCATACTGTC-TTAT 381
||..|||||.|||||.|||||||||||| || .||| || .|||
BPUM_0961___y 337 GTCAAGGAAATGATCGAGAAAATGGAGC-AGATGATCAT----TCGCTAT 381
BSNT_01729___ 382 ATCAAAA-GTAAGATTGAAGACG----GGATCAAAAGCGGCGCAATCAAG 426
||||||| |.||| |..||||.| ||||.|| ||||..||.|||
BPUM_0961___y 382 ATCAAAACGAAAG-TACAAGAAGCGATGGATAAA----GGCGACATTAAG 426
BSNT_01729___ 427 CCGTGCGACCCTGAACTGACAGCCTTTGTGATGCTGAAGCTTTATATCGC 476
||.||.||.||||||.||||.||.|||||||||.||||.||.|||||.||
BPUM_0961___y 427 CCTTGTGATCCTGAATTGACTGCATTTGTGATGGTGAAACTATATATTGC 476
BSNT_01729___ 477 GCTCATTTTTGACTGGGAAAAACAACACCCCCCGCTTGATAAAGAGA--- 523
.||.||||||||.||||||||.|.|.||...| |||.|..||.|||
BPUM_0961___y 477 ACTGATTTTTGATTGGGAAAAGCGATACGAGC--CTTTAACAAAAGAAGA 524
BSNT_01729___ 524 -------CAATTGCGGGACTGCTTGAATTGTATGTTGTCAAAGGATTGTC 566
.|||.||.||| |||| |||||..|.||||||.|.||
BPUM_0961___y 525 GGTAGCTGAATCGCTGGA--GCTT------TATGTCTTAAAAGGACTATC 566
BSNT_01729___ 567 AGCGAACTAG---- 576
.|| |||.|.
BPUM_0961___y 567 TGC-AACAACATAA 579
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