Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01723 and BPUM_0956
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:13
# Commandline: needle
# -asequence dna-align/BSNT_01723___yhgC.1.24716.seq
# -bsequence dna-align/BPUM_0956.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01723___yhgC-BPUM_0956.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01723___yhgC-BPUM_0956.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01723___yhgC
# 2: BPUM_0956
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 545
# Identity: 316/545 (58.0%)
# Similarity: 316/545 (58.0%)
# Gaps: 103/545 (18.9%)
# Score: 772.0
#
#
#=======================================
BSNT_01723___ 1 ATGAAGGTTTATATTACATATGGGACAGCCGATTTTTTAAAAACGATCGT 50
|||||.||.|||||.||.|||||.|||||.|||||.|||.|.|..||||.
BPUM_0956 1 ATGAATGTCTATATGACTTATGGAACAGCAGATTTCTTACATAAAATCGC 50
BSNT_01723___ 51 ACAGAAGCATCCCTCA-GAAAATATCCTTTTGATGCAGGGGCAGGAAAAC 99
|.|.||.|| |..||| ||||||.|.||||..|||.|.||..|.|||.|.
BPUM_0956 51 AAAAAAACA-CGATCAGGAAAATCTGCTTTATATGGACGGAAAAGAACAA 99
BSNT_01723___ 100 GC--CATTTTAATTCATGAAACAAACGGAGATACCGTTTTCCAGGCACCA 147
|| |..||| |.|||||.||..|.||.||.||.|||||..|.||.|||
BPUM_0956 100 GCAGCTCTTT--TCCATGAGACGGAGGGTGAGACTGTTTTTAAAGCCCCA 147
BSNT_01723___ 148 CACGCTTATGAAGTCATTGA--CCAAGTCGGAGAGATCAA-----ACATC 190
||.||.|||||.||.|||.| |.|| ||.|.|| .|||.
BPUM_0956 148 CATGCCTATGATGTGATTTATGCAAA-------AGGTGAACTTGCCCATT 190
BSNT_01723___ 191 CCGGTTTTG-CAGTATTGAACAATATTGCCGTTACTCAGGAAGGGCGTCC 239
|||||||.| || ..|||||..||||..|.||.|..|..|||.|..|..|
BPUM_0956 191 CCGGTTTCGTCA-CCTTGAATCATATCCCTGTGAAGCTTGAAAGTAGAGC 239
BSNT_01723___ 240 GCTGTTTGAA--AACAGATTTAAAAACAGAGCGGGAAAAGTC-GAAAACG 286
.||||||||| .|| |||.||.|.|.||..|.|.|..|| |||.|..
BPUM_0956 240 ACTGTTTGAATCTAC---TTTCAAGAAAAAGACGCATATCTCAGAACATC 286
BSNT_01723___ 287 AGCCTGGCTTTGAAGCAATTCGAGTGCTCCGTCCG------CTTGA--CA 328
|||..|||||..|.||..||||||||.|..|.||| ..||| .|
BPUM_0956 287 AGCGGGGCTTCAAGGCTCTTCGAGTGTTAAGACCGAAAAAAGATGAAGAA 336
BSNT_01723___ 329 GTGACACCTATGTCATTCTGAC-CTTGTGGGAAACGGA-----------A 366
||| |||.|.|||.|||| ||| ||||||.|.|| |
BPUM_0956 337 GTG-----TATTTAATTATGACACTT-TGGGAATCAGAGGACTTATTTGA 380
BSNT_01723___ 367 AGCGCCTTTCAAGACT-GGCAGCAGTCCGGTTCTTACAAAGAAGCCCACA 415
| |.|||||||||.| .|.|||| |||||.| ||||
BPUM_0956 381 A--GACTTTCAAGAATCAGAAGCA------TTCTTTC-----AGCC---- 413
BSNT_01723___ 416 AAAAACG-CGATACATCTGCCGGAATTGACACAACGTCGATCTTCTCCCG 464
||||| .||||| ||.| ||.||||||||.||
BPUM_0956 414 --AAACGATGATAC------------TGGC------TCCATCTTCTCTCG 443
BSNT_01723___ 465 GCCTTCCTATGTCACCACATATTTCGCTGTCGAATAG-------- 501
.|||.|.|||.||||..|.|||...||.|| .|.||
BPUM_0956 444 TCCTGCTTATCTCACATCCTATCATGCCGT--TACAGACAATTAA 486
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