Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01718 and BPUM_0954
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:13
# Commandline: needle
# -asequence dna-align/BSNT_01718___yhaA.1.24716.seq
# -bsequence dna-align/BPUM_0954___amaA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01718___yhaA-BPUM_0954___amaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01718___yhaA-BPUM_0954___amaA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01718___yhaA
# 2: BPUM_0954___amaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1284
# Identity: 809/1284 (63.0%)
# Similarity: 809/1284 (63.0%)
# Gaps: 189/1284 (14.7%)
# Score: 2293.5
#
#
#=======================================
BSNT_01718___ 1 TTGTCCATATCCACACTGCAGAAAGAG-ATAAACAAACAGCTCGACAGCT 49
.||.|.|||||.||..|.|| |||.|| ||.||..|||..||.|| |
BPUM_0954___a 1 ATGACAATATCTACTTTACA-AAAAAGCATCAATGAACGTCTTGA----T 45
BSNT_01718___ 50 G----TTTTGAAGAAATGGTTGAGATCAGGCGCCATATTCATATGTATCC 95
| ||.|||.|||||||||||.||.||.||||||.|.||.|||.||||
BPUM_0954___a 46 GAACATTATGAGGAAATGGTTGAAATTAGACGCCATCTCCACATGAATCC 95
BSNT_01718___ 96 TGAGCTCTCATTTCAAGAAGAAAAAACCGCCGCATTTATTGCTTCCTATT 145
|||.||.||.||.||.||||||.||||.|||||.||.||.||...|||.|
BPUM_0954___a 96 TGAACTTTCTTTCCAGGAAGAAGAAACAGCCGCTTTCATCGCCAGCTACT 145
BSNT_01718___ 146 ATGAGTCGTTAGGAGTCCCA---ATCCGCACGAAC----GTCGGCGGCAG 188
|.||....||| || |.||.||||.|| ||.||||||..
BPUM_0954___a 146 ACGACAAATTA-------CATATACCCACACGTACACAGGTAGGCGGCCA 188
BSNT_01718___ 189 AGGGGTTTTAGCATATATAGAAGGAAGCGAACCCGGCCCTACAGTCGCTT 238
.||.||..|.||.|.|||.|||||||.....||.||.||.||..|.||..
BPUM_0954___a 189 TGGTGTACTCGCCTTTATTGAAGGAACTTCTCCGGGGCCGACGATTGCCC 238
BSNT_01718___ 239 TGAGGGCCGACTTTGACGCTCTCCCCATTCAAGATGAAAAAGATGTCCCT 288
|.||.||.||.||.||.||.|||||.||.||.||||||||.||.||.|||
BPUM_0954___a 239 TCAGAGCTGATTTCGATGCACTCCCTATCCATGATGAAAAGGAAGTGCCT 288
BSNT_01718___ 289 TACGCCTC--CAAAGTGCCTGGTGTCATGCATGCATGCGGCCACGACGGC 336
|||...|| |||| .||||||||.||||||||||||||.|||||.||.
BPUM_0954___a 289 TACAAATCAACAAA--ACCTGGTGTGATGCATGCATGCGGGCACGATGGT 336
BSNT_01718___ 337 CACACCGCAGCTCTTCTCGCAGTGGCCA------------AGGTCCTTCA 374
|||||.||..|.||.||.|...|.||.| ||..||.|.|
BPUM_0954___a 337 CACACAGCGACACTGCTTGTCTTAGCGAAAATTTTGAATGAGCACCGTGA 386
BSNT_01718___ 375 CCAAAACAGACATGAACTGAAGGGAACATTTGTGATGATCCACCAGCATG 424
.|| ||.|| ||||||| |.|.||..|.|||||.|||||.|
BPUM_0954___a 387 TCA--------ATTAA---AAGGGAA-AATCGTCCTCATCCATCAGCACG 424
BSNT_01718___ 425 CAGAAGAATATTATCCGGGAGGCGCAAAGCCAATGATTGATGACGGCTGT 474
|||||||||||...||.||.||.|||||.|||||||||||.||||||||.
BPUM_0954___a 425 CAGAAGAATATGCGCCAGGCGGTGCAAAACCAATGATTGAAGACGGCTGC 474
BSNT_01718___ 475 CTCGAAAACGCG-----GATGTGATATTCGGCACTCATCTTTGGGCAACT 519
.|.|| || |||||.||||||||.||.||.||||||.|..|.
BPUM_0954___a 475 TTAGA-----CGGTGTCGATGTCATATTCGGTACACACCTTTGGTCTCCA 519
BSNT_01718___ 520 GAGCCGCT-CGGAACCATTCTTT------GCCGCCCCGGCGCCGTAATGG 562
||||| || .||.||..|||||| | |||...|.|.||||
BPUM_0954___a 520 GAGCC-CTGTGGCACAGTTCTTTATAAAAG------CGGGAACTTTATGG 562
BSNT_01718___ 563 CGGCGGCGGACCGATTTACGATTAAAGTCTTC---GGAAAGGGCGGCCAC 609
|.||.||.|||||.||..|.|||..|| ||| ||||| |||||.|||
BPUM_0954___a 563 CAGCTGCTGACCGCTTCTCTATTCGAG--TTCAGGGGAAA-GGCGGACAC 609
BSNT_01718___ 610 GGCGCTCATCCGCA-TGATACTAAAGACGCCGTCCTGATCGGTTCGCAAA 658
|||||.||.||.|| |.| ||.|||||.||.|||||.||||||||.||||
BPUM_0954___a 610 GGCGCCCAGCCTCACTTA-ACGAAAGATGCTGTCCTCATCGGTTCCCAAA 658
BSNT_01718___ 659 TCGT----TACCTCTTTGCAGCACATTGTCAGCCGCAAAGTCAATCCGAT 704
|||| .|| |||||.||..|.||...|||.|||||.|||||..|
BPUM_0954___a 659 TCGTGGCAAAC----TTGCAACAAGTCGTTGCCCGTAAAGTGAATCCAGT 704
BSNT_01718___ 705 TCAATCCGCCG-----TCATTTCGACAGGCTCCTTCATCGCCGACAATCC 749
|.|.||.||.| ||..||.| ||| .||..|.||.||.|||.|
BPUM_0954___a 705 TGATTCTGCTGTTGTATCTGTTGG--AGG---TTTTGTAGCAGAGAATGC 749
BSNT_01718___ 750 GTTTAATGTCATCGCAGACCAAGCAGT----ACTCATCGGCACAGCGCGT 795
.|||||.|||||.|||||....||.|| ||| ||.||.||.||.
BPUM_0954___a 750 TTTTAACGTCATTGCAGATTCTGCCGTTTTGACT----GGTACTGCACGG 795
BSNT_01718___ 796 TCTTTTGATGAAAATGTCCGGGACA--TTCTGGAGAA--AGAAATTGAAG 841
||.|||||.||||.||..||..||| .|| ||| ||||||||||.
BPUM_0954___a 796 TCCTTTGAAGAAAGTGCACGACACACCATC----GAACGAGAAATTGAAC 841
BSNT_01718___ 842 CGGTTGTAAAAGGAATATGCAGCATGCACGGCGCGTCCTATGAGTACACC 891
.|||.||.||.||..|.|||..||||||.|..|| |.|| |||||.
BPUM_0954___a 842 AGGTAGTGAATGGGGTGTGCGCCATGCATGATGC-----AGGA-TACACA 885
BSNT_01718___ 892 TATGAACA------GGGTTATCCGGCGGTTGTGAACCATCCTGCCGAAAC 935
||||||.| .||.|||||.||.||....||.||||| ||
BPUM_0954___a 886 TATGAATATGTGAGAGGATATCCTGCTGTCAAAAATCATCC------AA- 928
BSNT_01718___ 936 GAGCC-AC--------TTGGTGAGCACCGCAAAGAATACCGAGGGCGTTC 976
|||| || |||.||| ||.|||.|||.|.||.||.||.| ||
BPUM_0954___a 929 -AGCCGACTGAATTTATTGCTGA-CATCGCCAAGCAAACAGATGGTG-TC 975
BSNT_01718___ 977 --AGCAGGTCATTGACGGTGAACCGCAAATGGGCGGCGAGGATTTTTCTT 1024
|| |.||.|..||.|..|||.|.||||||||.||.||.||||||.|||
BPUM_0954___a 976 ATAG-AAGTAAAAGAAGCGGAAACCCAAATGGGTGGAGAAGATTTTGCTT 1024
BSNT_01718___ 1025 ATTACTTACAAAACGTGAAAGGCACTTTTTTCTTTACAGGTGCCGCTCCC 1074
|.|||.|.||..|.||....||.||.||.||.|..|||||.||| .|.||
BPUM_0954___a 1025 ACTACCTTCAGCATGTCCCTGGTACCTTCTTTTACACAGGCGCC-ATGCC 1073
BSNT_01718___ 1075 G---AACAGCCAGATCGA-GTTTATTCCCACCACCATCCGAAATTTGATA 1120
| ||||||.| ||| |..|||.||||.|||||||||||.|||||||
BPUM_0954___a 1074 GGAAAACAGCGA---CGACGCATATCCCCATCACCATCCGAAGTTTGATA 1120
BSNT_01718___ 1121 TCAACGAAAAAGCCATGCTGACA---GCGGCCAAGGTCCT------TGCC 1161
|||||||||||||.|||| || ||.||.|||||.|| ||||
BPUM_0954___a 1121 TCAACGAAAAAGCAATGC---CAGTCGCAGCGAAGGTACTCGCGAGTGCC 1167
BSNT_01718___ 1162 GGC----GCTGCGATCACCTATCATCAGCTATAA 1191
|.| .||.||||.| ||||
BPUM_0954___a 1168 GTCCTTTCCTACGATGA-------------ATAA 1188
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