Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01716 and BPUM_0953
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:13
# Commandline: needle
# -asequence dna-align/BSNT_01716___ecsC.1.24716.seq
# -bsequence dna-align/BPUM_0953___ecsC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01716___ecsC-BPUM_0953___ecsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01716___ecsC-BPUM_0953___ecsC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01716___ecsC
# 2: BPUM_0953___ecsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 790
# Identity: 468/790 (59.2%)
# Similarity: 468/790 (59.2%)
# Gaps: 161/790 (20.4%)
# Score: 1226.0
#
#
#=======================================
BSNT_01716___ 1 ATGACAGATAAT-CAGCTG--CTG-------ATGCAGGAAGC-------T 33
||| ||| |||||| |.| ||| |.||||| |
BPUM_0953___e 1 ATG------AATGCAGCTGAACGGGAGTTATATG-AAGAAGCCATTCTTT 43
BSNT_01716___ 34 TTGGAATGGAAAATGCATTTTTTGCGAAAGGATTCCATGTTTGAACGCTT 83
|| .|||.||..|||||..||||...|||.|.|.|.|||||..|
BPUM_0953___e 44 TT-------CAAACGCGATTTTTAAGAAAACCTTCAAAGATCGAACGGAT 86
BSNT_01716___ 84 TTCGAAGCGTGTCCAGACGAAGGTGAATGAACGGATTCCTGAAAAAATCC 133
|||.||..|.||.|||..|.|||||||....||.||.||||..|...|.|
BPUM_0953___e 87 TTCAAAAGGAGTTCAGCAGCAGGTGAACCGCCGAATCCCTGCCAGGTTTC 136
BSNT_01716___ 134 ATACGGTCGTCACCGAGAGT---GTGAGAAAAATGGTAGAAGCGACAATG 180
||...|||.|||| .||| ||.|.||.||||||.|||.|.||..|.
BPUM_0953___e 137 ATCAAGTCATCAC---AAGTGCGGTCAAAACAATGGTTGAATCCACCGTA 183
BSNT_01716___ 181 GCCGGCTCCAATATCA--TCACT---TATAAA---AAGGATACAAGTGC- 221
.|.|| ||.||| ||||| |.||.| |.|||| |.||
BPUM_0953___e 184 TCAGG-----ATCTCACTTCACTTCATTTACAGTCATGGAT----GAGCA 224
BSNT_01716___ 222 ACTGTCGCTCAGTGAAAAAAATGAATTGGCGAA----------AAAAACG 261
|.|.||..|||.|||...|||||||.||||.|| |||.||
BPUM_0953___e 225 ATTATCCATCATTGAGCGAAATGAACTGGCAAAAGAGAAAGTGAAATAC- 273
BSNT_01716___ 262 ATTGTTTCTTATCAGAAAGTGGCAGCTGC---TGAGGGAGTCGGCACCGG 308
|||||.|| ||||||||| |||.|||.|.||.||.||
BPUM_0953___e 274 ---------TATCAAAA---GGCAGCTGCGATTGAAGGAATTGGAACAGG 311
BSNT_01716___ 309 AGCGGGCGGCATTTTTTTAGGCATTGCTGATTTTCCGCTGCTGCTTTCAA 358
.||.||.||.|||||..|.||.||.||.||.||||||||.||||||...|
BPUM_0953___e 312 TGCAGGTGGTATTTTGCTCGGTATGGCGGACTTTCCGCTACTGCTTAGCA 361
BSNT_01716___ 359 TTAAGATGAA--GTGTTTATTTACCT----TGTCTTCCATTTACGGCTTT 402
|||||||||| ||.|||| |.|.|| ||| |||||.||.|||
BPUM_0953___e 362 TTAAGATGAAATGTCTTTA-TGAGCTGGCGTGT-----ATTTATGGTTTT 405
BSNT_01716___ 403 GATGTG------AAAGATGCACAAGAAAGGATGTTTTTGCTGCTCG--TG 444
|||.|| |||| |.|||||..|.|||||||| || | |.
BPUM_0953___e 406 GATTTGTCTCAAAAAG------AGGAAAGACTCTTTTTGCT-CT-GTATA 447
BSNT_01716___ 445 TTTCAGCTTGCGTTTTCGAGTGACGATGGCCGT--AAATCGCTTTTTTC- 491
|||||.|||||.||||| ||||.|| ..|||| ||
BPUM_0953___e 448 TTTCAACTTGCCTTTTC---------TGGCAGTGCGCATCG------TCA 482
BSNT_01716___ 492 --------TG----TCATCGAAAATTGGGAGACG------GAGAAAAAGT 523
|| ||||.||..|||||||.||| |||.||
BPUM_0953___e 483 AAAAATGATGAGCATCATAGATGATTGGGAAACGAGCCGCGAGGAA---- 528
BSNT_01716___ 524 GCATCGACTGG-AGAGTGTTCCAGCAGGAATATCGCGATTATATCGACGT 572
||.||.||| |.|| .||.||||||||.|||||.|||||.||.|||.|
BPUM_0953___e 529 --ATGGATTGGTACAG-CTTTCAGCAGGAGTATCGAGATTACATTGACCT 575
BSNT_01716___ 573 AGTGAAGCTTTTTCAGCTTTTGCCGGGCGTGGGAGCGGCAGTCGGCGGAA 622
|||||||||.|||||..|..||||||.|||.|||||.||.||.||.||..
BPUM_0953___e 576 AGTGAAGCTGTTTCAATTAATGCCGGTCGTCGGAGCCGCTGTTGGTGGTG 625
BSNT_01716___ 623 TTGCCAATTATAAGCTGCTTGCTCAGCTTGGAGAAACGGCAAGACATGTT 672
|.||.|||.||.|.|||...|..||.||.||.||....||..|.|||||.
BPUM_0953___e 626 TAGCAAATCATCATCTGACAGGACAACTCGGTGATGTCGCTCGCCATGTG 675
BSNT_01716___ 673 TTTCATCTGA-GGATATTAAAGGAAAAAGCCGGAGAATAA 711
||||| ||.| ||.|.||.||.||||| || ||||.
BPUM_0953___e 676 TTTCA-CTTACGGGTGTTGAAAGAAAA-----GA-AATAG 708
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