Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01702 and BPUM_0942
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence dna-align/BSNT_01702.1.24716.seq
# -bsequence dna-align/BPUM_0942.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01702-BPUM_0942.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01702-BPUM_0942.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01702
# 2: BPUM_0942
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 590
# Identity: 336/590 (56.9%)
# Similarity: 336/590 (56.9%)
# Gaps: 142/590 (24.1%)
# Score: 845.0
#
#
#=======================================
BSNT_01702 1 ATGAATTGCTGGAAGACCATAAATCTCATG--AAGGATTATGGCGCCGTT 48
||||||||.|||||||||||.||||| || |||||||||||
BPUM_0942 1 ATGAATTGTTGGAAGACCATTAATCT--TGAAAAGGATTATGG------- 41
BSNT_01702 49 CGCATAATATTA-ACTGCTG----------TATGTTT---TATGATTTTG 84
|.|||..| ||||||| ||.||.| |||..|||
BPUM_0942 42 ----TTATACAAGACTGCTGATTTCAGCCATAAGTCTTGCTATACTTT-- 85
BSNT_01702 85 GTTTTTATATCTACCTTTTTAGCTTTTGAGCTG-CTGCGGCCTGGCACAA 133
||||.||..|..|.||||||..||||.|.||| || |..||||..||.|
BPUM_0942 86 -TTTTCATTACGGCTTTTTTATGTTTTCAACTGACT-CATCCTGAAACGA 133
BSNT_01702 134 GCTTAAGCGATGAATATGTATCTTTATTCGGCGGTTTGCTCGTCGTTATT 183
|..|||||..|.|..|.|.| |.||..|||||| .|..||
BPUM_0942 134 GACTAAGCAGTCACAACGCA--------CCGCTTTTTGCT----ATGCTT 171
BSNT_01702 184 TTATTTGCACATAAAGTCATCCATGTCC------------------TGCC 215
|||.||| |.|.|| |.|.||||| |.||
BPUM_0942 172 TTACTTG----TGACGT--TGCTTGTCCACCGTGTGGTTCACTTGATCCC 215
BSNT_01702 216 AATCATCTGCAAAAAAAGAAAAATAGAAAAAAAGT--TTTA---CATATT 260
|.|.| ||.||||.||||||| |||..|.|| |||| .|.|||
BPUM_0942 216 AGTGA--TGAAAAACAAGAAAA----AAATGACGTTATTTAAACGAAATT 259
BSNT_01702 261 GCGCATGCGCACATGGAAACGCATACCAAA-AACAACAATGCTGATTTCA 309
|| |||.|.||..|.||||| ||||.| |||||...||||
BPUM_0942 260 GC-----------TGGCAGCGTGTGCCAAAGAACATC-ATGCTTTATTCA 297
BSNT_01702 310 CTCGTCAGCCCGTTCTTG-CTGATTACACCGGT----ATTGTTTTACGCA 354
||..|.||.||.|| ||| .|||||.||||||| .||||.|| |
BPUM_0942 298 CTTCTTAGTCCATT-TTGTGTGATTTCACCGGTTTACTTTGTGTT----A 342
BSNT_01702 355 GCACTGGCATTTCCGAATCACGCTCATTATTTTTGCATGATCTCGGGCAT 404
|...||||.|||||.|...|.||.||.||||||..|||.|||.|..|.||
BPUM_0942 343 GGTGTGGCGTTTCCTATGTATGCACACTATTTTATCATCATCGCAAGTAT 392
BSNT_01702 405 TCACGCCGGCTACTGTCTGCCTGA----TTTCCTGC-TGGCTCTCAAGCT 449
|||.||.|||||.|||.||||.|| ||...||| ||| ||.||
BPUM_0942 393 TCATGCAGGCTATTGTTTGCCGGACTTTTTATTTGCATGG-----AAACT 437
BSNT_01702 450 GATAAAAGCACCGAAAACC-GCTTTTATTGATCAGGAAGC---TGACGGC 495
|.|.||||||||.|||.|| || .|.||.|||| |||| .||||..
BPUM_0942 438 GCTCAAAGCACCTAAATCCTGC-ATCATCGATC---AAGCCCAAGACGAG 483
BSNT_01702 496 TTGGATATTCTTGTTGA--AAAGTAG-------------- 519
||.||||||.|.||||| |||
BPUM_0942 484 TTTGATATTTTAGTTGACCAAA----CATCCTCATCATGA 519
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