Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01693 and BPUM_0935
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence dna-align/BSNT_01693___yhaN.1.24716.seq
# -bsequence dna-align/BPUM_0935___yhaN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01693___yhaN-BPUM_0935___yhaN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01693___yhaN-BPUM_0935___yhaN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01693___yhaN
# 2: BPUM_0935___yhaN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3448
# Identity: 1709/3448 (49.6%)
# Similarity: 1709/3448 (49.6%)
# Gaps: 1223/3448 (35.5%)
# Score: 3563.0
#
#
#=======================================
BSNT_01693___ 1 TTGCGAATTATA------TCTTTACATATCTACCAATACGGAAAATTTTC 44
||.|.| ||..|.||||||..|||.|.|||.||||||||
BPUM_0935___y 1 ------ATGAAAATACGTTCACTCCATATCGCCCATTTCGGTAAATTTTC 44
BSNT_01693___ 45 CAATCGGACCTTTCACTTTTC------CGCCTCTC--CTGTCCAAGTCAT 86
.|||||.|||||||||||||| ||..|.|| || || |
BPUM_0935___y 45 AAATCGCACCTTTCACTTTTCTGATGACGGTTTTCAGCT-----AG---T 86
BSNT_01693___ 87 CTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTCATTGAAA 136
.|||||..|.|||||..|.||.||||||||..|||...|.||.||||||.
BPUM_0935___y 87 TTACGGTCTGAATGAATCGGGGAAAACGACATTGAAAACGTTTATTGAAT 136
BSNT_01693___ 137 GCATGCTGTTCGGTTTTCCGAAAACGAAAAAATATGAAC----CGAAAAC 182
..|||.|.||.||||||||.|| |||.||.|||.|| || ||||
BPUM_0935___y 137 CGATGTTATTTGGTTTTCCAAA----AAACAAGATGTACAAGTCG-AAAC 181
BSNT_01693___ 183 AGG----------CGGTG------TCTAC-------------------GG 197
||| .|||| || || ||
BPUM_0935___y 182 AGGGTTCTTTTTATGGTGGTTCCCTC-ACTTGTCATGATGACGAGATTGG 230
BSNT_01693___ 198 CGGTGTTC---TTGA-AGCTGAACATCCTGAGTATGGGGTGCTGAAGATC 243
||.|.||| |||| | |||||||| ||.|
BPUM_0935___y 231 CGTTATTCACATTGAGA---GAACATCC------------------GACC 259
BSNT_01693___ 244 GAACGGACGAAAGGGACTGCCGAAAAACTAAGCGTGTACACAGAAAAGGG 293
| ||| .|||..||| || |.|.||.|..||.| ||.||
BPUM_0935___y 260 G--CGG-----TGGGCATGC------AC-AGGTGTTTTTACCG--AATGG 293
BSNT_01693___ 294 CGAAGT-AAAGCAGGGAGATGTTTTAAAGCAGCTGTTCCAGGGCACAGAC 342
.||||| |||| |.|.||.|.||.||.||..|||.||..||||.||.||
BPUM_0935___y 294 TGAAGTGAAAG-ACGAAGCTTTTCTACAGGCGCTTTTAAAGGGAACGGA- 341
BSNT_01693___ 343 AGGTCG----TTGTACAAAGCCATATATTCGTTCGACGTATTCGGGCTGC 388
||| ||.||..||.|.||.||||||||.||.||.||.||.||||
BPUM_0935___y 342 ---TCGCAGATTATATCAATCAATCTATTCGTTTGATGTGTTTGGACTGC 388
BSNT_01693___ 389 AGGAAA--TTCACGCCTTTAATCGGGACAAGATAGGGGAATTTTTGCTCT 436
| ||| |.||.|||||.||.|.|||..|||||||.||||||.|.||.|
BPUM_0935___y 389 A--AAATGTCCAAGCCTTAAACCAGGATCAGATAGGCGAATTTCTACTTT 436
BSNT_01693___ 437 TTTCCAGCTTGTTTGGTGCTGAAGCCGTATCGAAGCTTGATTCAAGGCTG 486
|.||.||.||.|||||..|.||.||.|...|.|||.|.|||...||||||
BPUM_0935___y 437 TCTCAAGTTTATTTGGCTCAGATGCAGCCACCAAGATGGATAGCAGGCTG 486
BSNT_01693___ 487 ACGAAGGAA-AGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAAT 535
...|||.|| || |||..|||.|.||||||||||||.||.||.|||.|||
BPUM_0935___y 487 CTAAAGCAACAG-GAACAGCTGTTTAAACCAAATGGCCGCAAGCCTGAAT 535
BSNT_01693___ 536 TGAACCAGGAGCTGGAAACGCTT--AAGCAGCTGGCAGTGAAGCTAAAAC 583
|.||||||.||||.| |.||.|| ||| |||||.|||...||.|.||||
BPUM_0935___y 536 TAAACCAGCAGCTTG-ATCGTTTAAAAG-AGCTGACAGGTCAGTTGAAAC 583
BSNT_01693___ 584 AGGCTGAAGCAGAGGAAGCGGGCTATCATCAGCTTCTCGGGGAAAAACGA 633
||||| .||
BPUM_0935___y 584 ---------------AAGCG---------------------------AGA 591
BSNT_01693___ 634 ATGCTTGAAGCCCGCCTTGCAGCCGCGGAAACCGAATTGAAAGAGACGGC 683
.||.|.|||| |.||| .|.||||||..|||| |
BPUM_0935___y 592 TTGGTAGAAG--------GTAGC----TATACCGAAAAGAAA-------C 622
BSNT_01693___ 684 GGGA-CATATCCGAATGATTGAGGGAG-CGATTGAGCGAAAACCATTGCT 731
|||| || |||.|| |||.|.|||| |||| ||||||.| |.|.
BPUM_0935___y 623 GGGAGCA-ATCTGA---ATTAACGGAGACGAT----CGAAAAGC--TTCA 662
BSNT_01693___ 732 AAATGAAA------AAGCG-----ACAC--TC-----------GAA---- 753
|||||||| ||.|| |||| || |||
BPUM_0935___y 663 AAATGAAATGAAACAAACGGAAGAACACCTTCAGAAACTGACTGAATCCA 712
BSNT_01693___ 754 --CAGG---------TGATTGCAGAA----------TTTCCGGAACATGC 782
||.| |||||| |||| || |||.|
BPUM_0935___y 713 TTCAAGTCTATCCCATGATTG-AGAAAAAAGTGGAGTT----GAAAA--- 754
BSNT_01693___ 783 AGGACAATT-TCCTGCT-----GACGGACT-------------------- 806
||| |||| .||.||| |||.||.|
BPUM_0935___y 755 AGG--AATTAGCCCGCTTTCCAGACCGAGTCAAACGTTTTAGAGCAGAAA 802
BSNT_01693___ 807 ----GCATCAGCTGGA-AAAATATGAATCCCATCTTCACCCGAAA----- 846
||||.||||.|| |||.|| |||||.||.||||||||||||
BPUM_0935___y 803 CCAAGCATGAGCTTGATAAACTA-GAATCACACCTTCACCCGAAAAACGC 851
BSNT_01693___ 847 TCA-------GCACAGCTTGAGGCGCTTCGGGTGAAGATGGCGGAGTTGG 889
||| |||| ||| ||.| |.||||.|
BPUM_0935___y 852 TCAATTAACTGCAC----TGA-------------AACA----GAAGTTAG 880
BSNT_01693___ 890 A-------CAAAC---------AGAGG--CAAAAGC-TTATCCCCGATAA 920
| ||||| |.|.| |||..|| |||| ||.||
BPUM_0935___y 881 ATCATTTGCAAACCTCACTCGTACAAGTTCAACCGCTTTAT----GACAA 926
BSNT_01693___ 921 AGA-AC--TATTGGCGA--------------------------------- 934
.|| || ||.|||.||
BPUM_0935___y 927 GGATACCTTAATGGAGATGAATAGAGTCGTAGATGAAGCATCGAATGCTG 976
BSNT_01693___ 935 --------AAGAAACGCTGATACAAGAGCTTTCG-GCA----GCGTTTCA 971
||.|||||| |||..|||| |.||| ||| |.|.||||
BPUM_0935___y 977 AGCTTGTGAAAAAACGC--ATAGCAGAG-TGTCGAGCAAACCGTGATTCA 1023
BSNT_01693___ 972 TATGTACCAATCCTGTGGAGAACAGCTG--GCAGCCATTCAGGCACAGCT 1019
| ||.|.||| |.||.||..| ||.| |.|.|.||||
BPUM_0935___y 1024 T-TGAAACAA--------AAAATAGACGAAGCGG------AAGTAAAGCT 1058
BSNT_01693___ 1020 GCGCCAGGCGTCTGCGCAGACAGCGGCAGGGCTGGA-ACAGCTC-AATAA 1067
|.||.||.||.||..|| |.||||| ||.||
BPUM_0935___y 1059 -------------------AAAGTGGGAGCGCCCGATAAAGCTCGAACAA 1089
BSNT_01693___ 1068 AACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATG---ATTA-- 1112
|.| ||..||..||| |||||.||| .|| ||||
BPUM_0935___y 1090 ATC----GACGATTCGCT--TGAATTTGA---------GTGGGAATTAAA 1124
BSNT_01693___ 1113 --TGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGG---CAAG 1157
.||.||.|| || |||||..|.| | ||.|
BPUM_0935___y 1125 GGAGACTGTCA-CT----------------CAATACATCC--GTCTCATG 1155
BSNT_01693___ 1158 AGACAGAAAACGGCAGCTTGACGAGAC-ATTTGAACTTGCCCGGCAAGAG 1206
||||||||...||||.|.||.|| || .|||||.|..||..|.||.|||
BPUM_0935___y 1156 -GACAGAAAGGCGCAGTTAGATGA-ACGTTTTGATCACGCGAGACATGAG 1203
BSNT_01693___ 1207 CTGGAAGACACGGAAAAGGCCGTTCGTGCCGCTTCGTCCGCGATTCTTGA 1256
|||||.||..|.||| ||.|||| |.|
BPUM_0935___y 1204 CTGGACGAAGCAGAA---GCTGTTC----------------------TAA 1228
BSNT_01693___ 1257 A---GATAGCCAAAGAAAAGATAAAG--AAGCTGCTCTTAGAGCATATGA 1301
| |.|| ||.|||.|| .||| ||.||||.| .|||||.|.||
BPUM_0935___y 1229 AAGGGTTA---AAGGAACAG--CAAGTAAAACTGCAC--GGAGCAGAAGA 1271
BSNT_01693___ 1302 TGA-------AACACAGGGGCAGCACCAAGAGCAAGCGAAGCTCAGAGAA 1344
||| ||.|||.| |.|||| |.||||
BPUM_0935___y 1272 TGATGCGAATAATACAAG----------------ATCGAA----AAAGAA 1301
BSNT_01693___ 1345 CAGCTAACGTTTTTTGAAAGACAGCAG--GCTAAACAGAAAAAGACTGTC 1392
|.|| .||||...||||..| ||||..| .|||.|| |.
BPUM_0935___y 1302 -----ACCG---ATTGATTCACAGGCGTCGCTATTC----CAAGGCT-TG 1338
BSNT_01693___ 1393 ATTGCAGTTGGTATGTTGTTCATCGTTCTCTT--TTCTCTGCT-----GC 1435
||.|||.|||.|.||.||| ||||.|| ||||.|.|| .|
BPUM_0935___y 1339 ATCGCATTTGATGTGGTGT------TTCTGTTTGTTCTATTCTTTTTAAC 1382
BSNT_01693___ 1436 AGCAA----TGGATTCCCGCCATAAGTTTCGG----TGCTG-----CACT 1472
|| | |||| ||.|.|.||.|.||.||| |.||| |.||
BPUM_0935___y 1383 AG--AGTGGTGGA-TCACACTATTATTTGCGGGATTTTCTGTTTTTCTCT 1429
BSNT_01693___ 1473 TATTGTGT-ATTGGCTTGTATCAG-----GAAAATCGTCTTCTCGAAACA 1516
|.|| ||| |||..||..| |||| ||||.||...| |||||
BPUM_0935___y 1430 TCTT-TGTCATTTACTCAT-TCAGTCAAAGAAACTCTAAT-----AAACA 1472
BSNT_01693___ 1517 GCCGAGAGACAAGACAGCCCATGACGGATATTTCTCCAGCAGAAGCTGAA 1566
|||| .|||| ||.|||.||
BPUM_0935___y 1473 ----------AAGA--------AACGG----------AGAAGACGC---- 1490
BSNT_01693___ 1567 ATGCTTAGAGAAGCGTTATGGGAGGATGACC--GCAA-TAAGCA-GCACC 1612
|||||| || || .||| | ||| |||.|
BPUM_0935___y 1491 ---CTTAGA------TT------------CCTTTCAAGT--GCAGGCAGC 1517
BSNT_01693___ 1613 TTCT-----CACAC-----AGCGTGCAGCGCTCCAGCAAAAGGAGGCGGC 1652
|||| .|||| || |||.||||| ||.||
BPUM_0935___y 1518 TTCTGCTGAAACACTTATGAG--------------GCAGAAGGA-GCTGC 1552
BSNT_01693___ 1653 -GTATGAAAGGGTCATCCAGCAGTTTGAACAGTGGGA-----AGC-CGAA 1695
.||.|||||..||||||.|||.|.||||.|.||||| ||| |||
BPUM_0935___y 1553 TCTACGAAAGAATCATCCGGCAATATGAAGACTGGGAGCTAGAGCTCGA- 1601
BSNT_01693___ 1696 ATGGCGCC-GTCCTTTA-CA-CAGGTTGAGCGTTTTATGAATGAGCTCGG 1742
||| |||| | || ||.||.|| ||
BPUM_0935___y 1602 -----GCCTGTCC---AGCAGCAAGTAGA-------------------GG 1624
BSNT_01693___ 1743 ATTTAAGGAAGATCCATCATTTTTGCTTG----ATGCATACAGCT----- 1783
| ||.|||||..||.| ||.||||| .|| ||||
BPUM_0935___y 1625 A---AAAGAAGAGACAGC---TTGGCTTGTCGTCTG-----AGCTTTCTT 1663
BSNT_01693___ 1784 ---TAATGAAGG------ATGTTAAAAAAGAAGTGAAGAAAAA-GCAT-G 1822
||.|..||| ||.||..||||.||.| ||||| |.|| .
BPUM_0935___y 1664 TCCTAGTAGAGGCCTTCCATATTCTAAAACAATT----AAAAATGAATAC 1709
BSNT_01693___ 1823 AGCTGACCAT-TGAAGCAG--GCAGGCTGAAAAAG-------CACCGGAG 1862
|||.| ||| |||.| || .|||..|||||.|| |.|||...
BPUM_0935___y 1710 AGCGG--CATATGACG-AGTTTCAGCGTGAAATAGAAAAGCTCTCCGATC 1756
BSNT_01693___ 1863 AACATTCGA------AGAAC---------GCGT----CAGTATGCTTCTT 1893
|.||.|||| ||..| |||| ||||||.||||
BPUM_0935___y 1757 AGCAATCGATTTATGAGCGCAAAGTTTCAGCGTTAAGCAGTATCCTTC-- 1804
BSNT_01693___ 1894 CCCGTGAATCAGAGTCAGGA--TATCTC-------CATTTCGGACGCCCT 1934
||..|.||..|||| ||| || .||||| .|.|.|
BPUM_0935___y 1805 ------AAAAAAAGGAAGGAACTAT-TCAGGAGAATATTTC---AGTCTT 1844
BSNT_01693___ 1935 TCACACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGAAGCAAA 1984
||| |.|.|.|||| ||||| |||||.|
BPUM_0935___y 1845 TCA----------AGAGATATTG--------AAAGA---TGAGACG---- 1869
BSNT_01693___ 1985 AAAAG-GAAATTGAA--ACAGATATT-CAT-TATACAAAGGAACAGATGC 2029
||||| ||||..||| .||||.||| ||| |||.||
BPUM_0935___y 1870 AAAAGAGAAAAAGAACGCCAGACATTACATGTATCCA------------- 1906
BSNT_01693___ 2030 TTGAACTTGAGCAAGAAATACAGTATTTCCACG-CAC---------AGAT 2069
||.|||.||.| ||.|||.|..| |||| ||| |.||
BPUM_0935___y 1907 TTCAACATGCG------ATGCAGCAGCT-CACGACACTAGAAGGTGAAAT 1949
BSNT_01693___ 2070 TGAACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGA--GATGCG-TTTT 2116
|.|| ||| |.|.|||.|||.| ||||.| ||||
BPUM_0935___y 1950 TCAA----TAT-------------TACGAAAAACAAACGGATGAGCTTTT 1982
BSNT_01693___ 2117 TTGCCATAGCCGACATCAGCAG----------------GCAATTG----- 2145
|.|.|| ||..|| ||||| .|||.||
BPUM_0935___y 1983 TCGTCA-AGTAGA----AGCAGAGTCCAAAGAAGATTACCAAGTGCTTTC 2027
BSNT_01693___ 2146 -----------AAGGATACGGAGAAC--------AAGCTTCATCACGTAA 2176
|||.||||.|||||| .||||.||.||..|.|
BPUM_0935___y 2028 TCATCTATCGAAAGAATACCGAGAACGACTTTCTGAGCTGCAGCAGCTGA 2077
BSNT_01693___ 2177 ACGCACAGCTTCA---AGGCGGGT------ACCCGGAGGAACTTGAACTG 2217
|...|.||||||| |.||||.| |...||||||| ||.|.||
BPUM_0935___y 2078 ATCAAGAGCTTCATAGAAGCGGTTGTTTTGATGAGGAGGAA--TGGATTG 2125
BSNT_01693___ 2218 GCGGATTC-CAA-----TACGCT-TTCT------GAATTG----AAAGAT 2250
||| ||| ||| || |||| |.|.|| ||||..
BPUM_0935___y 2126 -----TTCGCAAAGGACTAC-CTCTTCTTGAGGAGGAGTGTGCCAAAGCA 2169
BSNT_01693___ 2251 AAG------------------CAATT---TGTTGAGAATGAAAGAAAAGA 2279
||| ||||| ||..|||||| |..|||||
BPUM_0935___y 2170 AAGCAGCACCTTCATGACGTTCAATTGAATGCGGAGAAT-ACGGAAAA-- 2216
BSNT_01693___ 2280 GCGGCTGAC--TGAGGAGATCGAGCGGCTCCGCAGCCAAATCGCACTGCT 2327
|| |.||.|||.|.||||| ||
BPUM_0935___y 2217 -------ACGTTTAGCAGAACTAGCGG-------------------TG-- 2238
BSNT_01693___ 2328 CTCAGTCAAACA-GGAACAATTAGAGGCTTCGGGATTGGTCTCAGA---- 2372
.|||.| || |||.||||.|||||.|||...||.||.||
BPUM_0935___y 2239 ------GAAATACGG--CAAATAGAAGCTTCTGGAACAGTGTCTGATTTG 2280
BSNT_01693___ 2373 CCTCA--AGCTTCAAACCGAAATGCAAAAAGAT-CGTGTAAAAGAAAC-G 2418
.|||| ||||| ||||.|..|||..|..|| || |||.|.| .
BPUM_0935___y 2281 ACTCATCAGCTT---ACCGCAGAGCAGGAGCATGCG-----AAGCACCTC 2322
BSNT_01693___ 2419 GCTAAAAAATGGGCCTCGATACAAATGGTC--AAACAGGTGATCAGAAAC 2466
||.|||||.|||||..|.||.||..|.||| .|.| ||.||..||.|.
BPUM_0935___y 2323 GCGAAAAAGTGGGCTGCCATTCAGCTTGTCCGCACC--GTCATACGAGAA 2370
BSNT_01693___ 2467 AAATTGGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTT-CTAGAGACGG 2515
||||||.|...|||||||.||| |.||.||.|..||.|| ||..|.||.|
BPUM_0935___y 2371 AAATTGAATGAGCATAAAGAAA-CAAGGTTGCCTGCATTGCTTCACACAG 2419
BSNT_01693___ 2516 C----AGGAGAATTCT-TCCGCCCTCTGAC---TGA-CGGAAACTACCAA 2556
| || ||.| |||..||..|.|| ||| || .||..||
BPUM_0935___y 2420 CCTCTAG-----TTTTATCCAACCGTTAACAAATGATCG----TTATGAA 2460
BSNT_01693___ 2557 ACCATTTATTTTT---CCGAAACGGATGATTCGATCATGGT------TAT 2597
.|.||||..|||| |.||| |||||||.|.||||||| .||
BPUM_0935___y 2461 GCGATTTTATTTTCACCTGAA---GATGATTTGCTCATGGTGAAAAGAAT 2507
BSNT_01693___ 2598 GCATCGCGATGGAACTGTCTATCATGCG----GAAGAGCTGTCACAAGGG 2643
| |||||| .|..||| |.|| ||.|||||.|||||.|..
BPUM_0935___y 2508 G------GATGGA--CGAATAT--TCCGCCCAGAGGAGCTTTCACAGGCA 2547
BSNT_01693___ 2644 ACGTGTGAACAGCTGTATACAGCGATCCGAT------TTGCTTTGGC-CG 2686
||||||||||||.|.|||...|||||.||.| ||||||||.| |.
BPUM_0935___y 2548 ACGTGTGAACAGATCTATCTGGCGATTCGTTTTGCGCTTGCTTTGTCTCA 2597
BSNT_01693___ 2687 TTACGCGCCAGGGTGGGTCAA-------AGCTTCCGTTCCAGCTTGACGA 2729
| ||| ||| ||||||||||...|.|.||.||
BPUM_0935___y 2598 T-------CAG-------CAAGATTGCCAGCTTCCGTTTATGATGGATGA 2633
BSNT_01693___ 2730 CAGTTTTGTTCATTTTGATCA---------------------GGAAAGGC 2758
|||.||||||||||||||||| |||.|.|.
BPUM_0935___y 2634 CAGCTTTGTTCATTTTGATCACGTTCGTCTAGGCAGAGTGCTGGAGATGA 2683
BSNT_01693___ 2759 TGA---AACGTGTATTACATGTTCTGTATAATTTATCTGAAGGCGGTAGG 2805
||| ||| |.|||.|||.||.| |..
BPUM_0935___y 2684 TGAACGAAC-----TCACACGTTTTGAA-------------------ACA 2709
BSNT_01693___ 2806 CAGATTTTGTATTTTACATGCCATGAGCA------------CGTAAAAGA 2843
|||.|.||.|||||.||.||.|||||||| .|.|.||||
BPUM_0935___y 2710 CAGCTGTTTTATTTCACCTGTCATGAGCATATGAAGCAAGCAGCAGAAGA 2759
BSNT_01693___ 2844 TGCA----TTTC----ATAGCAGCCAAATCATCCATTTGGTGTCATAA 2883
||.| ||.| .||||||...|||.|
BPUM_0935___y 2760 TGGACAGGTTACGAGTTTAGCAGTTGAATGA----------------- 2790
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