Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01687 and BPUM_0932
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:11
# Commandline: needle
# -asequence dna-align/BSNT_01687___yhaR.1.24716.seq
# -bsequence dna-align/BPUM_0932.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01687___yhaR-BPUM_0932.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01687___yhaR-BPUM_0932.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01687___yhaR
# 2: BPUM_0932
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 962
# Identity: 484/962 (50.3%)
# Similarity: 484/962 (50.3%)
# Gaps: 337/962 (35.0%)
# Score: 1164.0
#
#
#=======================================
BSNT_01687___ 1 ATGTATAGGAGAAAGAAAAAAGAAAGCGTATACTTGGAGGTGCTTCATAT 50
||
BPUM_0932 1 ------------------------------------------------AT 2
BSNT_01687___ 51 GGAGTTTGTTCA-ATATGCATGT--------AATGGGGCCGTTGCAGAGA 91
| .|| |||| ||.|| |||||| ||.|
BPUM_0932 3 G--------ACATATAT-CAAGTGTCAGCTAAATGGG---------GATA 34
BSNT_01687___ 92 TTATCCTGA-----------ATCGGCCTGATGCCCA----TCACGCCCTG 126
||.| ||| ||.||||.|||||..| |||...|.||
BPUM_0932 35 TTTT--TGAAATCGTTTTCGATAGGCCGGATGCTTACAATTCATTTCATG 82
BSNT_01687___ 127 AATGAACA-GTTGCTGTCTGAATTGAAGGAGGCA-GTCGAAATGGCGG-- 172
||.||| ||| || |||||||.||.|||||| || ||...|||||
BPUM_0932 83 --TGGACATGTT--TG-CTGAATTCAAAGAGGCATGT-GATGCGGCGGAG 126
BSNT_01687___ 173 -------CTGCAAGCGAGGCGCTCATCGTTCTTCTGAGAGGAAG-----C 210
.|||||..| |||| ||.||..||| |
BPUM_0932 127 GAAAGTAGTGCAAAAG---------TCGT-----TGTGATCAAGGGCGCC 162
BSNT_01687___ 211 GGGAAAGGCTTTTCGGCCGGTGGTGATATCAGAATGATGACGTC-AGAGC 259
||.|||||.|||||.||.||.||.|||||..|.|||||| | |.|||
BPUM_0932 163 GGAAAAGGGTTTTCAGCAGGCGGAGATATTGGCATGATG----CTAAAGC 208
BSNT_01687___ 260 ATGACCCTGATCA--ATTT-AAACGGCTGATGGATACGATTGAGGCTGTC 306
|.||...|||..| |||| .|.||..||||||||..|||.||||...|.
BPUM_0932 209 AGGAAAGTGAAGAGGATTTCCATCGAGTGATGGATTTGATCGAGGGGATT 258
BSNT_01687___ 307 AC-CTTGAATTTATATCAG--ATGAAGAAAGTGACAATTGCAGCCATTCA 353
|| ||| |.|.||.||| |||||.||||||||.||||| ||.
BPUM_0932 259 ACGCTT---TCTCTAGCAGGTATGAAAAAAGTGACGATTGC------TCT 299
BSNT_01687___ 354 T-------GGTGCTGCTGCGGGACTGGGCCTGAGTTTGGC---GCTT--- 390
| ||| |.|||| |.||||.||..|||.|| ||||
BPUM_0932 300 TGTCCACGGGT----CAGCGG--CAGGGCTTGCTTTTAGCTTTGCTTTAA 343
BSNT_01687___ 391 --TGTGCGGACATTG----TGC-TC--GCTGAAAAAAACGCCGTCCTCGC 431
||||...|| ||| ||| || |.||.||| .|||||
BPUM_0932 344 GCTGTGACTAC-TTGTTTATGCATCAAGATGCAAA---------GCTCGC 383
BSNT_01687___ 432 GATGAATTTTATCGGCATTGGGCTT-GTTCCGGACGGCGGAGGACATTAT 480
.||||||||||..|| |.|.||||| .||||.||.||||||||.||.|.|
BPUM_0932 384 CATGAATTTTAATGG-AGTAGGCTTAATTCCAGATGGCGGAGGGCACTTT 432
BSNT_01687___ 481 TTGCTGAAAAAAAGAATCGGTGAAGCAAA-AGCGAAAAAACTGATTTGGA 529
||.||.|.|||||||.||.||||| |||| .||||||.||.|||||||||
BPUM_0932 433 TTCCTCACAAAAAGAGTCAGTGAA-CAAACCGCGAAACAATTGATTTGGA 481
BSNT_01687___ 530 GCGGAAAAAAACTATCTGCCTCAGAAGCTGCCGATATGGGGCTTCTTGAT 579
|.|||.||||.||..||||...|||||| |||
BPUM_0932 482 GTGGACAAAAGCTTCCTGCTGAAGAAGC------------GCT------- 512
BSNT_01687___ 580 GGGACATTTGCCGGAGACCCTGCCGAAGGCG-----CAAGACCCATTATC 624
|.|..||| .||.|||.||.|||| |||||
BPUM_0932 513 ---AAAGCTGC-----GCCTTGCAGACGGCGTGTTTCAAGA--------- 545
BSNT_01687___ 625 GAAACCCTGTTGGCCTCCCCTCTTTTGGCGATG---ATCGAAACGA---- 667
|.|| |.||||| |||.|||.||
BPUM_0932 546 GGAA----------------------GTCGATGCGTATCAAAAAGAATGC 573
BSNT_01687___ 668 ---AAGCTATTTTTCAAAGCCTCCAGATTGAAGAACT------GAAAAAA 708
||||.||||.|.|| |.|.|.|.||.|||.|.| ||.||||
BPUM_0932 574 GTGAAGCCATTTATGAA--CATGCCGCTTCAAGCATTTATCGAGACAAAA 621
BSNT_01687___ 709 ------------------------------GTGCTATCCCTT-------- 720
.|||||.||.||
BPUM_0932 622 CGAATTTATTTCCAGCAGTCAGAGTCACAGCTGCTAGCCGTTCTTCAAAA 671
BSNT_01687___ 721 ---GAGCGCAGCGCCCAAGAGAGAATGAG---AAGGACCAAGGATCACCA 764
|||.||| ||.||.|..|||.|||| ||| |.|.|||||..|
BPUM_0932 672 GGAGAGGGCA--GCACAGGCAAGACTGAGGCAAAG---CCATGATCATAA 716
BSNT_01687___ 765 AGAAGGAATCCGTGCCTTTTTAGAAAAACGGGAGCCGAAGT---TTCAAG 811
.|||||.||.|..||.|||||||||||| ||.|||..| |||.||
BPUM_0932 717 GGAAGGCATTCAGGCATTTTTAGAAAAA----AGACGACCTGTATTCCAG 762
BSNT_01687___ 812 CGTAA------- 816
||
BPUM_0932 763 ---AATGTATAA 771
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