Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01681 and BPUM_0929
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:11
# Commandline: needle
# -asequence dna-align/BSNT_01681___yhaX.1.24716.seq
# -bsequence dna-align/BPUM_0929___yhaX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01681___yhaX-BPUM_0929___yhaX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01681___yhaX-BPUM_0929___yhaX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01681___yhaX
# 2: BPUM_0929___yhaX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 911
# Identity: 618/911 (67.8%)
# Similarity: 618/911 (67.8%)
# Gaps: 88/911 ( 9.7%)
# Score: 1950.5
#
#
#=======================================
BSNT_01681___ 1 GTGTCAAAACAATTGCTTGCCTTAAATATAGATGGAGCGCTGCTTCGGTC 50
|||||||||.||.|.|||||..|.||||||||||||.||.|.|||||.||
BPUM_0929___y 1 GTGTCAAAAAAACTACTTGCACTCAATATAGATGGAACGTTACTTCGTTC 50
BSNT_01681___ 51 GAACGGGAAGATTCATCAGGCAACGAAAGACGCGATTGAATATGTAAAGA 100
.||.||.||.||.|||...||.||.|||||.||..|.|||||.||.||||
BPUM_0929___y 51 CAATGGAAAAATCCATTCCGCTACAAAAGAAGCTGTGGAATACGTGAAGA 100
BSNT_01681___ 101 AAAAAGGGATTTACGTCACACTTGTGACCAACCGTCATTTTCGCTCAGCA 150
|||||||..|||||||.||.|||||.||||||||.||||||||.||.|||
BPUM_0929___y 101 AAAAAGGAGTTTACGTGACGCTTGTCACCAACCGGCATTTTCGTTCCGCA 150
BSNT_01681___ 151 CAGAAAATAGCGAAATCGCTAAAGCTTGATGCCAA-------GCTGATCA 193
||.|||||.||.||..||.|.|| |||.|||| .||..|.|
BPUM_0929___y 151 CAAAAAATTGCCAAGGCGTTGAA----GATTCCAACGTCAACCCTTGTGA 196
BSNT_01681___ 194 CCCATAGCGGGGCATATATCGCTGAGAAAAT---TGACGCCCCGTTTTTT 240
|.|||||.||.||||.|||.||..|.|||.| ||| |||.|.|..|.|
BPUM_0929___y 197 CGCATAGTGGTGCATTTATAGCGAATAAACTCGATGA-GCCACTTCATGT 245
BSNT_01681___ 241 GAA-AAAAGAATTTCTGATGATCATACCTTTAACATTGTTCAAGTGCTGG 289
||| |||..|| |.||.||..|.||.|||||..||||.|||.|.||.|
BPUM_0929___y 246 GAAGAAACTAA---CGGAAGAAAAAACATTTAATCTTGTACAAATTCTTG 292
BSNT_01681___ 290 AGAGCTATCAATGTAATATTCGGCTT-CTTCACGAAAAGTATTCCATCGG 338
|.||||.|.|.||||||.||| |||| ||.||.||.||.|..||.||.||
BPUM_0929___y 293 AAAGCTTTGATTGTAATGTTC-GCTTGCTACATGAGAAATTCTCAATTGG 341
BSNT_01681___ 339 AAACAAGAAAAAGGTGAATTCGAATTTATTG-----GGGAAAGCAC--TC 381
.|||..|||||| || ||.|.|.|..| ||||||| || |.
BPUM_0929___y 342 CAACCGGAAAAA----AA--CGCAGTCACAGCTGATGGGAAAG-ACGTTG 384
BSNT_01681___ 382 ATTCATCCGTCTGACCCGATCTTCTATCCAGTCCAGTTCGTTGAATCATT 431
||||||||||||||.|||||.||||||||.||.||.||.||||||||.||
BPUM_0929___y 385 ATTCATCCGTCTGATCCGATTTTCTATCCCGTGCAATTTGTTGAATCGTT 434
BSNT_01681___ 432 AAGCGATCTCCTCATGGATGAGCCGGTGAGTGCACCCGTCATCGAGGTGT 481
|||.|||.|.||.||||||||.|||||.|||.||||.||.||.||.||.|
BPUM_0929___y 435 AAGTGATATGCTGATGGATGAACCGGTTAGTACACCAGTGATTGAAGTAT 484
BSNT_01681___ 482 A------CACGGAGCACGACATTCAGCATGACATTACA-GAAACGATTAC 524
| ||..|||| ||||||.|||.||| || .||||.||| |
BPUM_0929___y 485 ATTCAACCAGTGAGC------TTCAGCCTGAAATT-CACCAAACCATT-C 526
BSNT_01681___ 525 AA-AAGCCTTCCCTGCAGTGGATGTGATTCGCGTAAACGATGAGAAGCTG 573
|| ||||.||.||..|.||.|||.|.||||...|.|..||||||||..||
BPUM_0929___y 527 AACAAGCTTTTCCATCTGTCGATCTTATTCAGATCAGTGATGAGAAAATG 576
BSNT_01681___ 574 AATATCGTCCCGAAAGGTGTCTCGAAGGAAGCGGG--------TTTGGCC 615
|||||.||....||||||||.|||||.|||||.|| |||.|.|
BPUM_0929___y 577 AATATTGTATGCAAAGGTGTATCGAAAGAAGCAGGGCTTTCTCTTTTGAC 626
BSNT_01681___ 616 CTCGTCGCTTCAGAGCTGGGCCTGAGTATGGATGATGTCGTGGCCATTGG 665
||| .|||| |.||..|.|.|.|.||.|||...||||.||||||
BPUM_0929___y 627 CTC--AGCTT------TAGGTTTAACTTTAGAAGATACGGTGGTCATTGG 668
BSNT_01681___ 666 GCAT----CAGTATGACGATCTGCCGATGATCGAACTTGCCGGTCTT-GG 710
|||| || ||.|||.|.||.|||.||||| |||.|.|.||| ||
BPUM_0929___y 669 GCATGGAACA----GATGATATCCCAATGCTCGAA-TTGGCTGGCTTAGG 713
BSNT_01681___ 711 GGTAGCGATGGGGAATGC----CGTTCCGGAAATTAAGAGAAAGGCAGAT 756
.||.||||||||.||||| |.|.|.| |||||.|.||.||.|||
BPUM_0929___y 714 CGTTGCGATGGGAAATGCAACTCATACTG----TTAAGCGTAAAGCCGAT 759
BSNT_01681___ 757 TGGGTTACAAGGTCCAATGACGAGCAAGGTGTCGCTTATATGATGAAGGA 806
|||||.|||.|.||..|.||.||.||.||.||||||||||||||.||.||
BPUM_0929___y 760 TGGGTGACACGCTCGCACGATGAACAGGGAGTCGCTTATATGATCAAAGA 809
BSNT_01681___ 807 ATATTTCCGAATGCAGCAGCGAAAAGGATTTCTTGATAAGTTCCACATGA 856
|||.||..||||||||||..||.||||||||.|..||.|.|||.|.||.|
BPUM_0929___y 810 ATACTTTAGAATGCAGCAAAGAGAAGGATTTTTACATCAATTCGATATTA 859
BSNT_01681___ 857 AACGTGTGTAA 867
|||| .|||
BPUM_0929___y 860 AACG---ATAA 867
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