Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01674 and BPUM_0925
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:10
# Commandline: needle
# -asequence dna-align/BSNT_01674___yheD.1.24716.seq
# -bsequence dna-align/BPUM_0925___yheD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01674___yheD-BPUM_0925___yheD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01674___yheD-BPUM_0925___yheD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01674___yheD
# 2: BPUM_0925___yheD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1619
# Identity: 839/1619 (51.8%)
# Similarity: 839/1619 (51.8%)
# Gaps: 517/1619 (31.9%)
# Score: 1811.0
#
#
#=======================================
BSNT_01674___ 1 GTGAATCCTAAA--CGGTTTTTG----ATCGGCATAGACAAAACC----A 40
||||| |.||| || ||| ||||.| ||..|.|| |
BPUM_0925___y 1 GTGAA--CAAAAATCG----TTGCATCATCGCC----ACTCATCCCGCAA 40
BSNT_01674___ 41 GTGAAAACACCCTGTTTCTGCCC-TC--TTCGCTGAAGCGAGACGGA--- 84
|||||||.||..|...|||.||| || || |.||.| ||..|||
BPUM_0925___y 41 GTGAAAAAACAATTCATCTTCCCGTCCATT---TTAAAC-AGCAGGAGGT 86
BSNT_01674___ 85 --------CTTTTGCATGCCGCATTCGGAACGAAGGTTGTC-------AG 119
||.||||.| .|||||.|| ||
BPUM_0925___y 87 GATCTATTCTCTTGCTT---------------TAGGTTCTCGTCTAGTAG 121
BSNT_01674___ 120 ATG----CCACGTTGCTTACAGACGGCATCTGGAAC---------AAACC 156
||| |..||||.|.|| .|||| ||| |||
BPUM_0925___y 122 ATGACTTCACCGTTTCCTA------TCATC---AACATCCAAATAAAA-- 160
BSNT_01674___ 157 GTGCTACTCTCTGAAAATCTGTTTCATGAGCTTTTGCTC---CCCCACCG 203
|..||.|.||.|||.||||.|.|.|.|| |||.||| ||..|.|
BPUM_0925___y 161 -TTTTATTATCAGAAGATCTATATAAAGA---TTTACTCATTCCTTATC- 205
BSNT_01674___ 204 AAGC-AGGGCTGATATACTGAT--TCAT-GATCATACAGTGCATATCGGG 249
||.| ||.|||||| .|||| .||| ||||||||..||..|||.|||
BPUM_0925___y 206 AATCAAGAGCTGAT---GTGATCGCCATCGATCATACCTTGTTTATAGGG 252
BSNT_01674___ 250 CCGTTAGTCGGCATCTTTACGGCAGGGTTTACTGTATCTCTTGA------ 293
|||.|..|.||.||.||.||.||||| |.||||
BPUM_0925___y 253 CCGCTGCTTGGTATTTTCACCGCAGG------------TTTTGAGAAAAG 290
BSNT_01674___ 294 -ACG--TCCATTTAAGGATCG---TTCCCTCTTTTTTTCTAAACTTG--T 335
||| .|||.| ||||.|| | |...|||||||.|.|||.|| .
BPUM_0925___y 291 CACGCAGCCACT--AGGAACGAGAT--CAGATTTTTTTATTAACCTGCTG 336
BSNT_01674___ 336 CAC---GTTACACGAGCAAGCCGG---AGGCTACTGCTTCGTTTTTGGCG 379
||| .|.|.|| ||||.|.||| .|.||| || ||||||
BPUM_0925___y 337 CACTCTTTCAAAC-AGCATGTCGGTTTTGCCTA-----TC-TTTTTG--- 376
BSNT_01674___ 380 CGCACCAAATCAAT----TGGGAGGAAGGCACGATTGAAGGCCTCCTTT- 424
|.||..|.||.|| |||||..||||.|...|||||||..|..|.|
BPUM_0925___y 377 -GTACTCATTCGATTGACTGGGATAAAGGAATAGTTGAAGGATTGTTGTA 425
BSNT_01674___ 425 ---ACAGGGAAAACGGCTGGGAGAAAAAAATCGTTCCATTGCCGAACGTC 471
||| |||||| .|||...|||||||...|.||.|||||....|||
BPUM_0925___y 426 TCAACA--GAAAAC--ATGGATTAAAAAAAAGATGCCCTTGCCCTCAGTC 471
BSNT_01674___ 472 GTTTATGACCGTTTGCCGAACCGAAAAATTGAAG---ATTCA-CTTCTCT 517
.||||.||.|||.|.||.||..|||| .|.|| |.||| |.| ||.
BPUM_0925___y 472 ATTTACGATCGTCTTCCAAATAGAAA---GGCAGCTCAGTCAGCAT-TCG 517
BSNT_01674___ 518 TGCAACATACAAA----AAAGAGGCTGATCG-ATGAATATCAGATCCCAT 562
|.|||.|.||||| ||| ||.| || |.||.|||.|.||.||.|
BPUM_0925___y 518 TTCAAGAAACAAAACGCAAA----CTCA-CGCAAGACTATGACATTCCTT 562
BSNT_01674___ 563 GGTTTAA----TAAAACGTTTTTCAATAAATGGAACGTTCAT---CAATT 605
||||.|| | |.|||||.|||||||||.|..||||| |||||
BPUM_0925___y 563 GGTTCAACCCTT----CTTTTTTTAATAAATGGGATATTCATGAACAATT 608
BSNT_01674___ 606 GCTCGAAAAAGATCCGAGAACGGCAC----CCTTT--TTGCCTAGATCCG 649
|.| ||.|||| ||.|| .|| ||||| ||.||.| .|||
BPUM_0925___y 609 GTT---AACAGAT--GAAAA---AACATGTCCTTTTCTTCCCCA-TTCC- 648
BSNT_01674___ 650 AGCTGACACCGTCTGTGGAGCTGATTGATGAGCTCTGTGGCGCAT-ACAA 698
|.||..| ||||.|.|.|.|| .||||| | |.||
BPUM_0925___y 649 -----ATACAAT---TGGATCCGGTAGA--CGCTCT--------TAATAA 680
BSNT_01674___ 699 AAAAG-------------TCTATA--------------TCAAACCGGCTA 721
||.|| ||||.| |.||||||.|.|
BPUM_0925___y 681 AATAGAAACACTCCTCCATCTACATGAGGTCATTTACTTAAAACCGTCAA 730
BSNT_01674___ 722 ATGGAGCACTC--GGCACCGGCATTTATCAGCTGAAAAGAACAGATGGCG 769
||||| |.|| |||..|||.||||||||..|.||.|.|||
BPUM_0925___y 731 ATGGA--AGTCATGGCGACGGTATTTATCAATTAAACAAAAC-------- 770
BSNT_01674___ 770 GCCTGACGGTA-------AAGCATACGAATGACGCCAA--AA-------- 802
|.||.|.||.| |||| .|.||| ||| ||
BPUM_0925___y 771 GACTTATGGAATCACTGTAAGC--TCAAAT-----CAAGGAAGGGCTGTT 813
BSNT_01674___ 803 -CATTT-------------ACTTCGATTG---ATTATTCCGATGCCGCCT 835
||||| |||||| || |.|.|||.||.|
BPUM_0925___y 814 CCATTTGACTCAGTAGAGCACTTCG--TGACCAATCTTCGGAAG------ 855
BSNT_01674___ 836 CATTCCTTGCAGAATTTCAAAAACAGCAGAACCCGTCCGACTTTCTCATT 885
..||.||| |.||||| ||||||.|...|
BPUM_0925___y 856 --GACCATGC---AATTCAA------------------GACTTTATGGCT 882
BSNT_01674___ 886 CAGCAAGGTGTTGATCT-CATCGAATTTCAAGGCA---AACCAGCGGATT 931
||.|||||..|.|..|| |..|.||| ||.|| |||||..|||||
BPUM_0925___y 883 CAACAAGGCATAGCACTACTACAAAT----AGACAATCAACCAATGGATT 928
BSNT_01674___ 932 TCCGTGTCCATACCAATAAAAACAGAAAAGGAAAATGGACAGTGACAGCA 981
||.|.||.||||||||||||||.|...|.||..|.||||||||.||.|||
BPUM_0925___y 929 TCAGAGTTCATACCAATAAAAATAAGTACGGTCATTGGACAGTCACGGCA 978
BSNT_01674___ 982 ATCGCCGT---AAAAATTTCCGGAAAGAACAGCATTACAACACATCTTTC 1028
||.|| ||||||.||.||..|..|||.|.|.||.||.||||.|||
BPUM_0925___y 979 ---GCAGTAGCAAAAATATCTGGCCATCACACCGTCACGACTCATCATTC 1025
BSNT_01674___ 1029 TAACGGCGGCACTGTAAAGACACTTGCGGAAGTGTACGATG---ATCCCG 1075
..|.|||||.||.||.||.||.| |.||.|||| .|||.|
BPUM_0925___y 1026 ATATGGCGGTACGGTGAAAACTC---------TATATGATGTTTTTCCAG 1066
BSNT_01674___ 1076 CTGAAAGAGTTGAG----GTCATTAAAA----------AGCTTT------ 1105
.||||| || || |||||| ||||||
BPUM_0925___y 1067 --AAAAGA----AGACGCGT--TTAAAAATGTTAGAGCAGCTTTTTTATA 1108
BSNT_01674___ 1106 CTGC----AGCGGCACTGACGGCAAGCCATGTCCTTCATGA--------- 1142
|||| | |||| .|||||.|||.||.||||
BPUM_0925___y 1109 CTGCCATTA----CACT------TAGCCAAGTCATTGATGAAAAAGTGTC 1148
BSNT_01674___ 1143 ---TCATATCGAGGGGTTTATCGGGGAGATCGGTTTCGATTTTGGCATTG 1189
||| |||.||.||.||||||||.|||||.|||||||
BPUM_0925___y 1149 CGGTCA------------TATTGGTGAAATCGGTTTTGATTTAGGCATTG 1186
BSNT_01674___ 1190 ATCAGAACGGTAAAG---TATGGATGTTTGAAGCGAATTCGCGCCCGGGC 1236
|.||||..|| || |.||||||||||||||.|||||.||.||.|||
BPUM_0925___y 1187 ACCAGACAGG---AGCTATCTGGATGTTTGAAGCCAATTCTCGACCTGGC 1233
BSNT_01674___ 1237 CGAAGC-ATTTTTTCTCATCCAAATTTGCATCATGTTGATTCTC-TTACA 1284
| || ||.||||| ||.|||| |||| ||.|.
BPUM_0925___y 1234 C---GCGATGTTTTC-------------CAGCATG-----TCTCATTGCG 1262
BSNT_01674___ 1285 AAAC----------------GAAGAAGCTTT----GAATACGCGTCATA- 1313
|||| ||| ||..||| ||.|||||..|.||
BPUM_0925___y 1263 AAACTCAGAAAGACTGATCGGAA-AAAATTTGATGGATTACGCAGCTTAC 1311
BSNT_01674___ 1314 -TTT----ATCTGA--GAAGGCAA--TCATA-----------TCTCCTGA 1343
||| |.|.|| .|| ||| |||.| |||.||||
BPUM_0925___y 1312 CTTTCACAAACAGACTTAA--CAACTTCAGATTACACTAACGTCTACTGA 1359
BSNT_01674___ 1344 AGCATTGTGGCCTTCGTAA 1362
BPUM_0925___y 1359 ------------------- 1359
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