Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01674 and BPUM_0925

See Amino acid alignment / Visit BSNT_01674 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:10
# Commandline: needle
#    -asequence dna-align/BSNT_01674___yheD.1.24716.seq
#    -bsequence dna-align/BPUM_0925___yheD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01674___yheD-BPUM_0925___yheD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01674___yheD-BPUM_0925___yheD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01674___yheD
# 2: BPUM_0925___yheD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1619
# Identity:     839/1619 (51.8%)
# Similarity:   839/1619 (51.8%)
# Gaps:         517/1619 (31.9%)
# Score: 1811.0
# 
#
#=======================================

BSNT_01674___      1 GTGAATCCTAAA--CGGTTTTTG----ATCGGCATAGACAAAACC----A     40
                     |||||  |.|||  ||    |||    ||||.|    ||..|.||    |
BPUM_0925___y      1 GTGAA--CAAAAATCG----TTGCATCATCGCC----ACTCATCCCGCAA     40

BSNT_01674___     41 GTGAAAACACCCTGTTTCTGCCC-TC--TTCGCTGAAGCGAGACGGA---     84
                     |||||||.||..|...|||.||| ||  ||   |.||.| ||..|||   
BPUM_0925___y     41 GTGAAAAAACAATTCATCTTCCCGTCCATT---TTAAAC-AGCAGGAGGT     86

BSNT_01674___     85 --------CTTTTGCATGCCGCATTCGGAACGAAGGTTGTC-------AG    119
                             ||.||||.|               .|||||.||       ||
BPUM_0925___y     87 GATCTATTCTCTTGCTT---------------TAGGTTCTCGTCTAGTAG    121

BSNT_01674___    120 ATG----CCACGTTGCTTACAGACGGCATCTGGAAC---------AAACC    156
                     |||    |..||||.|.||      .||||   |||         |||  
BPUM_0925___y    122 ATGACTTCACCGTTTCCTA------TCATC---AACATCCAAATAAAA--    160

BSNT_01674___    157 GTGCTACTCTCTGAAAATCTGTTTCATGAGCTTTTGCTC---CCCCACCG    203
                      |..||.|.||.|||.||||.|.|.|.||   |||.|||   ||..|.| 
BPUM_0925___y    161 -TTTTATTATCAGAAGATCTATATAAAGA---TTTACTCATTCCTTATC-    205

BSNT_01674___    204 AAGC-AGGGCTGATATACTGAT--TCAT-GATCATACAGTGCATATCGGG    249
                     ||.| ||.||||||   .||||  .||| ||||||||..||..|||.|||
BPUM_0925___y    206 AATCAAGAGCTGAT---GTGATCGCCATCGATCATACCTTGTTTATAGGG    252

BSNT_01674___    250 CCGTTAGTCGGCATCTTTACGGCAGGGTTTACTGTATCTCTTGA------    293
                     |||.|..|.||.||.||.||.|||||            |.||||      
BPUM_0925___y    253 CCGCTGCTTGGTATTTTCACCGCAGG------------TTTTGAGAAAAG    290

BSNT_01674___    294 -ACG--TCCATTTAAGGATCG---TTCCCTCTTTTTTTCTAAACTTG--T    335
                      |||  .|||.|  ||||.||   |  |...|||||||.|.|||.||  .
BPUM_0925___y    291 CACGCAGCCACT--AGGAACGAGAT--CAGATTTTTTTATTAACCTGCTG    336

BSNT_01674___    336 CAC---GTTACACGAGCAAGCCGG---AGGCTACTGCTTCGTTTTTGGCG    379
                     |||   .|.|.|| ||||.|.|||   .|.|||     || ||||||   
BPUM_0925___y    337 CACTCTTTCAAAC-AGCATGTCGGTTTTGCCTA-----TC-TTTTTG---    376

BSNT_01674___    380 CGCACCAAATCAAT----TGGGAGGAAGGCACGATTGAAGGCCTCCTTT-    424
                      |.||..|.||.||    |||||..||||.|...|||||||..|..|.| 
BPUM_0925___y    377 -GTACTCATTCGATTGACTGGGATAAAGGAATAGTTGAAGGATTGTTGTA    425

BSNT_01674___    425 ---ACAGGGAAAACGGCTGGGAGAAAAAAATCGTTCCATTGCCGAACGTC    471
                        |||  ||||||  .|||...|||||||...|.||.|||||....|||
BPUM_0925___y    426 TCAACA--GAAAAC--ATGGATTAAAAAAAAGATGCCCTTGCCCTCAGTC    471

BSNT_01674___    472 GTTTATGACCGTTTGCCGAACCGAAAAATTGAAG---ATTCA-CTTCTCT    517
                     .||||.||.|||.|.||.||..||||   .|.||   |.||| |.| ||.
BPUM_0925___y    472 ATTTACGATCGTCTTCCAAATAGAAA---GGCAGCTCAGTCAGCAT-TCG    517

BSNT_01674___    518 TGCAACATACAAA----AAAGAGGCTGATCG-ATGAATATCAGATCCCAT    562
                     |.|||.|.|||||    |||    ||.| || |.||.|||.|.||.||.|
BPUM_0925___y    518 TTCAAGAAACAAAACGCAAA----CTCA-CGCAAGACTATGACATTCCTT    562

BSNT_01674___    563 GGTTTAA----TAAAACGTTTTTCAATAAATGGAACGTTCAT---CAATT    605
                     ||||.||    |    |.|||||.|||||||||.|..|||||   |||||
BPUM_0925___y    563 GGTTCAACCCTT----CTTTTTTTAATAAATGGGATATTCATGAACAATT    608

BSNT_01674___    606 GCTCGAAAAAGATCCGAGAACGGCAC----CCTTT--TTGCCTAGATCCG    649
                     |.|   ||.||||  ||.||   .||    |||||  ||.||.| .||| 
BPUM_0925___y    609 GTT---AACAGAT--GAAAA---AACATGTCCTTTTCTTCCCCA-TTCC-    648

BSNT_01674___    650 AGCTGACACCGTCTGTGGAGCTGATTGATGAGCTCTGTGGCGCAT-ACAA    698
                          |.||..|   ||||.|.|.|.||  .|||||        | |.||
BPUM_0925___y    649 -----ATACAAT---TGGATCCGGTAGA--CGCTCT--------TAATAA    680

BSNT_01674___    699 AAAAG-------------TCTATA--------------TCAAACCGGCTA    721
                     ||.||             ||||.|              |.||||||.|.|
BPUM_0925___y    681 AATAGAAACACTCCTCCATCTACATGAGGTCATTTACTTAAAACCGTCAA    730

BSNT_01674___    722 ATGGAGCACTC--GGCACCGGCATTTATCAGCTGAAAAGAACAGATGGCG    769
                     |||||  |.||  |||..|||.||||||||..|.||.|.|||        
BPUM_0925___y    731 ATGGA--AGTCATGGCGACGGTATTTATCAATTAAACAAAAC--------    770

BSNT_01674___    770 GCCTGACGGTA-------AAGCATACGAATGACGCCAA--AA--------    802
                     |.||.|.||.|       ||||  .|.|||     |||  ||        
BPUM_0925___y    771 GACTTATGGAATCACTGTAAGC--TCAAAT-----CAAGGAAGGGCTGTT    813

BSNT_01674___    803 -CATTT-------------ACTTCGATTG---ATTATTCCGATGCCGCCT    835
                      |||||             ||||||  ||   |.|.|||.||.|      
BPUM_0925___y    814 CCATTTGACTCAGTAGAGCACTTCG--TGACCAATCTTCGGAAG------    855

BSNT_01674___    836 CATTCCTTGCAGAATTTCAAAAACAGCAGAACCCGTCCGACTTTCTCATT    885
                       ..||.|||   |.|||||                  ||||||.|...|
BPUM_0925___y    856 --GACCATGC---AATTCAA------------------GACTTTATGGCT    882

BSNT_01674___    886 CAGCAAGGTGTTGATCT-CATCGAATTTCAAGGCA---AACCAGCGGATT    931
                     ||.|||||..|.|..|| |..|.|||    ||.||   |||||..|||||
BPUM_0925___y    883 CAACAAGGCATAGCACTACTACAAAT----AGACAATCAACCAATGGATT    928

BSNT_01674___    932 TCCGTGTCCATACCAATAAAAACAGAAAAGGAAAATGGACAGTGACAGCA    981
                     ||.|.||.||||||||||||||.|...|.||..|.||||||||.||.|||
BPUM_0925___y    929 TCAGAGTTCATACCAATAAAAATAAGTACGGTCATTGGACAGTCACGGCA    978

BSNT_01674___    982 ATCGCCGT---AAAAATTTCCGGAAAGAACAGCATTACAACACATCTTTC   1028
                        ||.||   ||||||.||.||..|..|||.|.|.||.||.||||.|||
BPUM_0925___y    979 ---GCAGTAGCAAAAATATCTGGCCATCACACCGTCACGACTCATCATTC   1025

BSNT_01674___   1029 TAACGGCGGCACTGTAAAGACACTTGCGGAAGTGTACGATG---ATCCCG   1075
                     ..|.|||||.||.||.||.||.|         |.||.||||   .|||.|
BPUM_0925___y   1026 ATATGGCGGTACGGTGAAAACTC---------TATATGATGTTTTTCCAG   1066

BSNT_01674___   1076 CTGAAAGAGTTGAG----GTCATTAAAA----------AGCTTT------   1105
                       .|||||    ||    ||  ||||||          ||||||      
BPUM_0925___y   1067 --AAAAGA----AGACGCGT--TTAAAAATGTTAGAGCAGCTTTTTTATA   1108

BSNT_01674___   1106 CTGC----AGCGGCACTGACGGCAAGCCATGTCCTTCATGA---------   1142
                     ||||    |    ||||      .|||||.|||.||.||||         
BPUM_0925___y   1109 CTGCCATTA----CACT------TAGCCAAGTCATTGATGAAAAAGTGTC   1148

BSNT_01674___   1143 ---TCATATCGAGGGGTTTATCGGGGAGATCGGTTTCGATTTTGGCATTG   1189
                        |||            |||.||.||.||||||||.|||||.|||||||
BPUM_0925___y   1149 CGGTCA------------TATTGGTGAAATCGGTTTTGATTTAGGCATTG   1186

BSNT_01674___   1190 ATCAGAACGGTAAAG---TATGGATGTTTGAAGCGAATTCGCGCCCGGGC   1236
                     |.||||..||   ||   |.||||||||||||||.|||||.||.||.|||
BPUM_0925___y   1187 ACCAGACAGG---AGCTATCTGGATGTTTGAAGCCAATTCTCGACCTGGC   1233

BSNT_01674___   1237 CGAAGC-ATTTTTTCTCATCCAAATTTGCATCATGTTGATTCTC-TTACA   1284
                     |   || ||.|||||             ||.||||     |||| ||.|.
BPUM_0925___y   1234 C---GCGATGTTTTC-------------CAGCATG-----TCTCATTGCG   1262

BSNT_01674___   1285 AAAC----------------GAAGAAGCTTT----GAATACGCGTCATA-   1313
                     ||||                ||| ||..|||    ||.|||||..|.|| 
BPUM_0925___y   1263 AAACTCAGAAAGACTGATCGGAA-AAAATTTGATGGATTACGCAGCTTAC   1311

BSNT_01674___   1314 -TTT----ATCTGA--GAAGGCAA--TCATA-----------TCTCCTGA   1343
                      |||    |.|.||  .||  |||  |||.|           |||.||||
BPUM_0925___y   1312 CTTTCACAAACAGACTTAA--CAACTTCAGATTACACTAACGTCTACTGA   1359

BSNT_01674___   1344 AGCATTGTGGCCTTCGTAA   1362
                                        
BPUM_0925___y   1359 -------------------   1359


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