Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05943 and BPUM_0922
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:30
# Commandline: needle
# -asequence dna-align/BSNT_05943___msmX.1.24716.seq
# -bsequence dna-align/BPUM_0922___msmX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05943___msmX-BPUM_0922___msmX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05943___msmX-BPUM_0922___msmX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05943___msmX
# 2: BPUM_0922___msmX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1162
# Identity: 782/1162 (67.3%)
# Similarity: 782/1162 (67.3%)
# Gaps: 119/1162 (10.2%)
# Score: 2559.5
#
#
#=======================================
BSNT_05943___ 1 ATGGCTGAATTGCGGATGGAGCACATTTATAAATTTTATGATCAGAAGGA 50
|||||||||.||..|.|..|.||.|||||||||.|.||.|||.|.||||.
BPUM_0922___m 1 ATGGCTGAAATGATGCTTAATCAAATTTATAAAGTGTACGATAACAAGGT 50
BSNT_05943___ 51 ACCGGCGGTTGATGACTTTAACCTTCATATTGCCGATAAGGAATTTATCG 100
|.|.||.||.||..|||||||.||.|||||.|..|||||.||||||||.|
BPUM_0922___m 51 AACAGCAGTAGACAACTTTAATCTACATATAGAAGATAAAGAATTTATTG 100
BSNT_05943___ 101 TATTCGTCGGCCCGTCCGGCTGCGGGAAATCAACGACGCTGCGAATGGTC 150
|.||.||.||.||.||.||.|||||.||||||||.||.||.||.|||.|.
BPUM_0922___m 101 TGTTTGTTGGTCCATCTGGTTGCGGAAAATCAACAACCCTTCGCATGATT 150
BSNT_05943___ 151 GCAGGACTTGAAGAAATTTCGAAAGGCGATTTTTATATTGAAGGAAAACG 200
|||||.||||||||.|||||..||||.||||||..|.|.||.||||||||
BPUM_0922___m 151 GCAGGGCTTGAAGAGATTTCACAAGGGGATTTTCTTTTAGATGGAAAACG 200
BSNT_05943___ 201 GGTCAATGATGTAGCGCCAAAGGACAGGGATATCGCGATGGTATTTCAGA 250
|.|.|||||||||||.|||||.|||.||||||||||.|||||.||.||.|
BPUM_0922___m 201 GATGAATGATGTAGCACCAAAAGACCGGGATATCGCAATGGTTTTCCAAA 250
BSNT_05943___ 251 ACTACGCGCTCTATCCGCATATGACGGTCTACGATAATATCGCGTTCGGG 300
|.|||||..|.|||||.||.||||..||.|||||||||||.||.||.||.
BPUM_0922___m 251 ATTACGCATTATATCCTCACATGAATGTATACGATAATATGGCTTTTGGA 300
BSNT_05943___ 301 CTCAAGCTTCGGAAAATGCCGAAGCCTGAAATCAAAAAAAGAGTAGAGG- 349
.|.|||.|.||.|||.| ||.|||||||.|||..||..||.||
BPUM_0922___m 301 TTAAAGTTGCGAAAATT-------CCCGAAATCAGAAATTGATGAGCGGG 343
BSNT_05943___ 350 ------AAGCTGCTAAAATTCTCGGGCTGGAGGAATATTTGCACCGTAAA 393
|.||.||||||||..|.|||||.|||.|||||||..||.|.|||
BPUM_0922___m 344 TTCGAAATGCCGCTAAAATATTAGGGCTTGAGCAATATTTAGACAGGAAA 393
BSNT_05943___ 394 CCGAAAGCGCTGTCAGGCGGACAGAGACAGCGGGTTGCGCTGGGCCGGGC 443
||.|||||||||||.|||||.||.|||||.||.|||||.||.||..|.||
BPUM_0922___m 394 CCAAAAGCGCTGTCCGGCGGTCAAAGACAACGTGTTGCACTCGGTAGAGC 443
BSNT_05943___ 444 AATCGTGCGGGATGCAAAGGTGTTCCTGATGGATGAGCCTTTGTCAAACC 493
|||.|||||.|||||||||||.||.||..||||||||||..|.||.||..
BPUM_0922___m 444 AATTGTGCGTGATGCAAAGGTCTTTCTTTTGGATGAGCCGCTTTCTAATT 493
BSNT_05943___ 494 TGGACGCGAAGCTGAGGGTGCAAATGCGGGCGGAAATCAT-TAAGCTCCA 542
|.||.||.||.||..|.||.||||||||.||.||||| || ||||||.||
BPUM_0922___m 494 TAGATGCAAAACTTCGCGTTCAAATGCGTGCTGAAAT-ATCTAAGCTTCA 542
BSNT_05943___ 543 CCAGAGACTGCAGACTACAACGATTTATGTGACGCATGACCAGACAGAAG 592
.||..|.|||||.||.|||...||.|||||.||.|||||.|||||.||||
BPUM_0922___m 543 TCAACGTCTGCAAACGACATTTATCTATGTCACACATGATCAGACTGAAG 592
BSNT_05943___ 593 CGCTGACAATGGCGACACGGATTGTAGTCATGAAAGATGGGAAAATTCAG 642
|..||||||||||.||.||..||||.||.|||||||||||....||||||
BPUM_0922___m 593 CAATGACAATGGCTACTCGTCTTGTCGTAATGAAAGATGGCTTTATTCAG 642
BSNT_05943___ 643 CAGATCGGGACGCCGAAGGATGTATATGAATTCCCTGAAAACGTCTTTGT 692
|||.|.||..||||||||||||||||||||...||.||.||.||.|||||
BPUM_0922___m 643 CAGGTTGGAGCGCCGAAGGATGTATATGAAAATCCAGAGAATGTATTTGT 692
BSNT_05943___ 693 CGGCGGGTTTATCGGATCACCAGCGATGAACTTTTTCAAAGGGAAGCTC- 741
.||.||.||.||.||.||.||.||||||||.|||||||.|||.||||||
BPUM_0922___m 693 AGGTGGATTCATTGGCTCTCCTGCGATGAATTTTTTCACAGGAAAGCTCT 742
BSNT_05943___ 742 ---ACGG----ATGGC--TTAATCAAAATCGGTTCTGCGGCAT-TAACCG 781
|||| ||.|| || ..||||.| |||| ||...|
BPUM_0922___m 743 CTGACGGTGCCATTGCAGTT--GGAAAAAC---------GCATATACGTG 781
BSNT_05943___ 782 TCCCGGAAGGAAAAATGAAAGT-----GCTGCGTGAAAAAGGCTACATCG 826
|.||.||||||||.|||||.|| ||.|| .||||.||.||||
BPUM_0922___m 782 TACCAGAAGGAAAGATGAAGGTATTACGCAGC-----CAAGGTTATATCG 826
BSNT_05943___ 827 GCAAAGAGGTCATCTTCGGCATCCGTCCTGAGGATATACATGATGAA--- 873
|.||||||.|||||.|.||.|||.|.||.||.|||.|.|||||||||
BPUM_0922___m 827 GAAAAGAGATCATCCTTGGAATCAGACCAGAAGATTTTCATGATGAACCC 876
BSNT_05943___ 874 TTGATTGTCGTGGAATCATATAAGAACTCTTCGATTAAGGC-CAAA-ATC 921
.||.|| .|.|||.|||.|.|| ||| |||| |||
BPUM_0922___m 877 GTGTTT---ATAGAAGCATCTGAG--------------GGCACAAAGATC 909
BSNT_05943___ 922 AAT------------GTTGCAGAGCTGCTCGGTTCTGAAATCATGATTTA 959
||| |||||.||..|..|.||..|.||||..|||.||||
BPUM_0922___m 910 AATGCGAGCGTAGAAGTTGCTGAATTAATGGGAGCAGAAACGATGCTTTA 959
BSNT_05943___ 960 ---TTCGC-AGATCGACAACCAAGACTTTATTGCGCGGATCGACGCCCGC 1005
|||.| .|||.|.|||.| .||||||||.||..|.||..|.||.
BPUM_0922___m 960 CTCTTCTCTCGATGGTCAATC----TTTTATTGCACGTGTTGATTCTCGT 1005
BSNT_05943___ 1006 CTCGATATTCAATCGGGCGATGAGCTGACGGTC----------GCATTTG 1045
..||||.|||| ||| || |||..|| ||..|.|
BPUM_0922___m 1006 ACCGATGTTCA----GGC--TG----GACAATCTATACCTCTTGCCATCG 1045
BSNT_05943___ 1046 ATATGAATAAAGGTCATTTCTTTGACAGTGAGACAGAAGTGAGAATCCG- 1094
|||||||.||||..||.|||||||||...||.||.||..|..|.||.||
BPUM_0922___m 1046 ATATGAACAAAGCCCACTTCTTTGACTCGGATACGGAGCTCCGCATTCGT 1095
BSNT_05943___ 1095 --------ATAA 1098
||||
BPUM_0922___m 1096 TCCGCTGAATAA 1107
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