Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01654 and BPUM_0914
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:09
# Commandline: needle
# -asequence dna-align/BSNT_01654___yhdZ.1.24716.seq
# -bsequence dna-align/BPUM_0914___yhdZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01654___yhdZ-BPUM_0914___yhdZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01654___yhdZ-BPUM_0914___yhdZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01654___yhdZ
# 2: BPUM_0914___yhdZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 809
# Identity: 505/809 (62.4%)
# Similarity: 505/809 (62.4%)
# Gaps: 127/809 (15.7%)
# Score: 1473.5
#
#
#=======================================
BSNT_01654___ 1 ---------------------TTG------GAAACATTCAAA---AGTAT 20
.|| ||||.||| || |||.|
BPUM_0914___y 1 GTGGATCAAACAAAGGTGACAGTGCTAAAAGAAAAATT--AACGCAGTCT 48
BSNT_01654___ 21 TCTACATGAAGCACAGAGAATTGTTGTGCTGACAGGAGCGGGAATGAGCA 70
|| |||| |||.|.||.||..||||.|||||.|||||||
BPUM_0914___y 49 TC-ACAT------------ATTATGGTACTTTCAGGTGCGGGTATGAGCA 85
BSNT_01654___ 71 CAGAATCAGGGATTCCAGACTTTCGTTCAGCAGGGGGCATTTGGACGGAA 120
|.||||||||.|||||.||.|||.|.|||.|.||.||..|.|||||.|||
BPUM_0914___y 86 CGGAATCAGGTATTCCTGATTTTAGGTCAACGGGCGGTTTATGGACTGAA 135
BSNT_01654___ 121 GATGCC--TCAAGAATGGAAGCAATGAGCCTTGAT--TATTTTTTAAGTC 166
||..|| || |.|||||.||.|||||| .|.| ||.|||||| ||
BPUM_0914___y 136 GACACCAGTC--GCATGGAGGCGATGAGC--AGGTCCTACTTTTTA--TC 179
BSNT_01654___ 167 --ATCCGCGGCTGTTTTGGCCCAAATTCAAAGAATTGTTCCAGATGAAAA 214
||||.|..|..||.|||||.||||||||.||||||||.||||||||||
BPUM_0914___y 180 AAATCCTCATCAATTCTGGCCGAAATTCAAGGAATTGTTTCAGATGAAAA 229
BSNT_01654___ 215 TGAGCGGCAGC-TTTGAACCGAATGAAGGCCATTTGTTTTTAGCTGAGCT 263
||||||| .|| |..||.||||||...||.|||...||||||||..|.||
BPUM_0914___y 230 TGAGCGG-GGCGTACGAGCCGAATAGCGGGCATACCTTTTTAGCCAACCT 278
BSNT_01654___ 264 GGAGAAGCAAGGGAAGCAGGTCAATATTTTTACGCAAAACATTGACGGTC 313
.|||||.|||||.|||||.||..|||||||.||.|||||.||||||||..
BPUM_0914___y 279 TGAGAAACAAGGAAAGCATGTGGATATTTTCACCCAAAATATTGACGGAT 328
BSNT_01654___ 314 TTCATAAAAAAGCGGGGAGCAGGCATGTATACGAACTGCATGGTTCTATC 363
|.|||||||||||.||.|||..|||||||||.|||||.||.|||||.||.
BPUM_0914___y 329 TACATAAAAAAGCAGGAAGCCAGCATGTATATGAACTCCACGGTTCCATT 378
BSNT_01654___ 364 CAGACAGCAGCTTGTCC-----GGCATGCGGCGCCCGATATGATCTTCCC 408
||.||.||..||||.|| |.||||||.| ||||||.||.||.
BPUM_0914___y 379 CAAACCGCTACTTGCCCATCGTGCCATGCGAC-----ATATGAACTGCCT 423
BSNT_01654___ 409 CATTTGCT----GGAGCGGGAGGTGCCGGAGTG---CACGGCGGCCGGAA 451
.||||..| |.| ||.|||||.|..|| ||.||...|||.|.
BPUM_0914___y 424 TATTTATTACAAGAA----GAAGTGCCTGTATGTCTCAAGGTTTCCGCAG 469
BSNT_01654___ 452 ACAATGG--GGACATTTGCGGAACGGTATTAAAAACCGATGTTGTTCTCT 499
|| || ||||||.||.|.|| ||.||.|||||.||||||||.||.|
BPUM_0914___y 470 AC---GGACGGACATGTGGGCAA--GTGTTGAAAACAGATGTTGTCCTTT 514
BSNT_01654___ 500 TTGGCGACGCCGTCATGCACTTTGACACCCTTTATGAAAAG------CTG 543
||||.||....||||..||.||||| |.|.|.|.|| ||.
BPUM_0914___y 515 TTGGAGATAGGGTCAAACATTTTGA------TCAAGTAGAGAAATCACTT 558
BSNT_01654___ 544 GATCAAGCAGATCTTTTATTGGTTATCGGCACGTCTCTCGAAGTGGCTCC 593
.|.|||||.||.|||.|..|.||.||.||.||.||.||.|||||.||.||
BPUM_0914___y 559 CAGCAAGCGGACCTTCTGCTCGTCATGGGAACCTCCCTAGAAGTAGCGCC 608
BSNT_01654___ 594 GGCTAGATTTGTGCCTGAGGATGCAAGTCTGATTCCCGGCATGAAGAAAG 643
.||.||||.|.|.||.||.|||||...||..|.||||..|||....||.|
BPUM_0914___y 609 AGCAAGATATATTCCAGAAGATGCTGCTCAAAATCCCTCCATCTTCAAGG 658
BSNT_01654___ 644 TCATCATAAACCT---TGAACCAACGTATTGCGA-CAGCTTGTTTGACAT 689
|.||.||.||..| ||| |||..|.|.||| || .||||||||..|
BPUM_0914___y 659 TGATGATGAATTTGAGTGA---AACAGAATACGATCA-ATTGTTTGATCT 704
BSNT_01654___ 690 GGTCATCCATCAAAAAATCGGCGAGTTTGCCCG---AAG-TTTGGGCATA 735
.|||.|.|||.||..|||.||||| .|.|| ||| ||| |||
BPUM_0914___y 705 TGTCTTTCATGAACGAATTGGCGA----TCTCGTGAAAGATTT----ATA 746
BSNT_01654___ 736 AAAAAGTGA 744
|
BPUM_0914___y 747 A-------- 747
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