Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01654 and BPUM_0914

See Amino acid alignment / Visit BSNT_01654 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:09
# Commandline: needle
#    -asequence dna-align/BSNT_01654___yhdZ.1.24716.seq
#    -bsequence dna-align/BPUM_0914___yhdZ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01654___yhdZ-BPUM_0914___yhdZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01654___yhdZ-BPUM_0914___yhdZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01654___yhdZ
# 2: BPUM_0914___yhdZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 809
# Identity:     505/809 (62.4%)
# Similarity:   505/809 (62.4%)
# Gaps:         127/809 (15.7%)
# Score: 1473.5
# 
#
#=======================================

BSNT_01654___      1 ---------------------TTG------GAAACATTCAAA---AGTAT     20
                                          .||      ||||.|||  ||   |||.|
BPUM_0914___y      1 GTGGATCAAACAAAGGTGACAGTGCTAAAAGAAAAATT--AACGCAGTCT     48

BSNT_01654___     21 TCTACATGAAGCACAGAGAATTGTTGTGCTGACAGGAGCGGGAATGAGCA     70
                     || ||||            |||.|.||.||..||||.|||||.|||||||
BPUM_0914___y     49 TC-ACAT------------ATTATGGTACTTTCAGGTGCGGGTATGAGCA     85

BSNT_01654___     71 CAGAATCAGGGATTCCAGACTTTCGTTCAGCAGGGGGCATTTGGACGGAA    120
                     |.||||||||.|||||.||.|||.|.|||.|.||.||..|.|||||.|||
BPUM_0914___y     86 CGGAATCAGGTATTCCTGATTTTAGGTCAACGGGCGGTTTATGGACTGAA    135

BSNT_01654___    121 GATGCC--TCAAGAATGGAAGCAATGAGCCTTGAT--TATTTTTTAAGTC    166
                     ||..||  ||  |.|||||.||.||||||  .|.|  ||.||||||  ||
BPUM_0914___y    136 GACACCAGTC--GCATGGAGGCGATGAGC--AGGTCCTACTTTTTA--TC    179

BSNT_01654___    167 --ATCCGCGGCTGTTTTGGCCCAAATTCAAAGAATTGTTCCAGATGAAAA    214
                       ||||.|..|..||.|||||.||||||||.||||||||.||||||||||
BPUM_0914___y    180 AAATCCTCATCAATTCTGGCCGAAATTCAAGGAATTGTTTCAGATGAAAA    229

BSNT_01654___    215 TGAGCGGCAGC-TTTGAACCGAATGAAGGCCATTTGTTTTTAGCTGAGCT    263
                     ||||||| .|| |..||.||||||...||.|||...||||||||..|.||
BPUM_0914___y    230 TGAGCGG-GGCGTACGAGCCGAATAGCGGGCATACCTTTTTAGCCAACCT    278

BSNT_01654___    264 GGAGAAGCAAGGGAAGCAGGTCAATATTTTTACGCAAAACATTGACGGTC    313
                     .|||||.|||||.|||||.||..|||||||.||.|||||.||||||||..
BPUM_0914___y    279 TGAGAAACAAGGAAAGCATGTGGATATTTTCACCCAAAATATTGACGGAT    328

BSNT_01654___    314 TTCATAAAAAAGCGGGGAGCAGGCATGTATACGAACTGCATGGTTCTATC    363
                     |.|||||||||||.||.|||..|||||||||.|||||.||.|||||.||.
BPUM_0914___y    329 TACATAAAAAAGCAGGAAGCCAGCATGTATATGAACTCCACGGTTCCATT    378

BSNT_01654___    364 CAGACAGCAGCTTGTCC-----GGCATGCGGCGCCCGATATGATCTTCCC    408
                     ||.||.||..||||.||     |.||||||.|     ||||||.||.||.
BPUM_0914___y    379 CAAACCGCTACTTGCCCATCGTGCCATGCGAC-----ATATGAACTGCCT    423

BSNT_01654___    409 CATTTGCT----GGAGCGGGAGGTGCCGGAGTG---CACGGCGGCCGGAA    451
                     .||||..|    |.|    ||.|||||.|..||   ||.||...|||.|.
BPUM_0914___y    424 TATTTATTACAAGAA----GAAGTGCCTGTATGTCTCAAGGTTTCCGCAG    469

BSNT_01654___    452 ACAATGG--GGACATTTGCGGAACGGTATTAAAAACCGATGTTGTTCTCT    499
                     ||   ||  ||||||.||.|.||  ||.||.|||||.||||||||.||.|
BPUM_0914___y    470 AC---GGACGGACATGTGGGCAA--GTGTTGAAAACAGATGTTGTCCTTT    514

BSNT_01654___    500 TTGGCGACGCCGTCATGCACTTTGACACCCTTTATGAAAAG------CTG    543
                     ||||.||....||||..||.|||||      |.|.|.|.||      ||.
BPUM_0914___y    515 TTGGAGATAGGGTCAAACATTTTGA------TCAAGTAGAGAAATCACTT    558

BSNT_01654___    544 GATCAAGCAGATCTTTTATTGGTTATCGGCACGTCTCTCGAAGTGGCTCC    593
                     .|.|||||.||.|||.|..|.||.||.||.||.||.||.|||||.||.||
BPUM_0914___y    559 CAGCAAGCGGACCTTCTGCTCGTCATGGGAACCTCCCTAGAAGTAGCGCC    608

BSNT_01654___    594 GGCTAGATTTGTGCCTGAGGATGCAAGTCTGATTCCCGGCATGAAGAAAG    643
                     .||.||||.|.|.||.||.|||||...||..|.||||..|||....||.|
BPUM_0914___y    609 AGCAAGATATATTCCAGAAGATGCTGCTCAAAATCCCTCCATCTTCAAGG    658

BSNT_01654___    644 TCATCATAAACCT---TGAACCAACGTATTGCGA-CAGCTTGTTTGACAT    689
                     |.||.||.||..|   |||   |||..|.|.||| || .||||||||..|
BPUM_0914___y    659 TGATGATGAATTTGAGTGA---AACAGAATACGATCA-ATTGTTTGATCT    704

BSNT_01654___    690 GGTCATCCATCAAAAAATCGGCGAGTTTGCCCG---AAG-TTTGGGCATA    735
                     .|||.|.|||.||..|||.|||||    .|.||   ||| |||    |||
BPUM_0914___y    705 TGTCTTTCATGAACGAATTGGCGA----TCTCGTGAAAGATTT----ATA    746

BSNT_01654___    736 AAAAAGTGA    744
                     |        
BPUM_0914___y    747 A--------    747


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