Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01653 and BPUM_0913

See Amino acid alignment / Visit BSNT_01653 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:09
# Commandline: needle
#    -asequence dna-align/BSNT_01653___yhdY.1.24716.seq
#    -bsequence dna-align/BPUM_0913___yhdY.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01653___yhdY-BPUM_0913___yhdY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01653___yhdY-BPUM_0913___yhdY.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01653___yhdY
# 2: BPUM_0913___yhdY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1191
# Identity:     763/1191 (64.1%)
# Similarity:   763/1191 (64.1%)
# Gaps:         177/1191 (14.9%)
# Score: 2340.0
# 
#
#=======================================

BSNT_01653___      1 --------------ATGCCGGAT---TATCTGCAGCAGTATTTTACGCTT     33
                                   ||   ||||   ||       || ||||||||..|.
BPUM_0913___y      1 ATGTTTACACAAAAAT---GGATGGATA-------CA-TATTTTACAGTA     39

BSNT_01653___     34 GATAACATCATACAAATCGGCATCAG-CTTGGCGATTTTGCTGGTGTTTC     82
                     |||......||.||||||||.||.|| |||.| .|||||..||.| |||.
BPUM_0913___y     40 GATGTTGCGATCCAAATCGGTATTAGTCTTTG-TATTTTATTGCT-TTTT     87

BSNT_01653___     83 TTA-TACTGAGAAAATTATTCAC-AAGATATTTCTTT-AACTTGCTTTTT    129
                     ||| |.||..|.|||.||||.|| ||| ||.||.||| |.||| ||.|||
BPUM_0913___y     88 TTATTGCTTCGGAAAGTATTTACGAAG-TACTTATTTCATCTT-CTCTTT    135

BSNT_01653___    130 AATTTGACAAACCGGCCGAAAACAGAAATTTTTAAACAGGTGGTTCTGGC    179
                     |...||||.||.|||.|.|||||.||..|..||||.||..|.|||.||||
BPUM_0913___y    136 AGGCTGACCAATCGGTCTAAAACGGAGGTCATTAATCAAATTGTTGTGGC    185

BSNT_01653___    180 GTTTGATAAGCCGGCCAGATGGTTTTTTGTTGCCCTTGGGCTGTTTTTAG    229
                     .||.||.||.||.||||||...||||||||.||.||||||.|.|.|||.|
BPUM_0913___y    186 ATTCGAAAAACCAGCCAGACTTTTTTTTGTCGCACTTGGGTTATATTTTG    235

BSNT_01653___    230 CGAT----CCGGTATTCACCGTTTTTAGATGAGCA-AATACCG--GTCAT    272
                     ||.|    |.||    ||||.|..||   |||||| .|||..|  |||||
BPUM_0913___y    236 CGTTAAGACAGG----CACCATACTT---TGAGCATCATATGGATGTCAT    278

BSNT_01653___    273 CAGCAAAATATACCGCTC---------ACTGATTGTGGCGCTCTTGTGCT    313
                     ||.||||.||||..|.||         |.||||..||.||         |
BPUM_0913___y    279 CATCAAATTATATAGATCCTCCATTATATTGATGCTGACG---------T    319

BSNT_01653___    314 GGGGTCTTTGTAATTTGACCGCAACATCGTCGTTTATCTTCCATAAGGTG    363
                     ||||.|||||||||||.||.|||.|.||.||.||..|.||.||.||.||.
BPUM_0913___y    320 GGGGGCTTTGTAATTTAACTGCAGCTTCTTCTTTCTTATTTCAAAAAGTA    369

BSNT_01653___    364 AATCAGCGCTTCGAGCTT-------GACATGGATGACATTCTGGCCCCGT    406
                     ||       |||||..||       ||.||||||||.|||.|.||.||||
BPUM_0913___y    370 AA-------TTCGAAATTTGAATTAGAAATGGATGATATTTTAGCGCCGT    412

BSNT_01653___    407 TTTTATCCAAATTGCTCCGTTTTGTGATCATTGCGCTCAGTGTCAGTGTG    456
                     |||||||.||..||.|.||.||..|.||||||||.||||||.|.|||||.
BPUM_0913___y    413 TTTTATCGAAGGTGTTTCGCTTCATTATCATTGCACTCAGTATTAGTGTC    462

BSNT_01653___    457 ATCGCTCAGGAATTCAATTATGATGTCAACGGATTTGTAGCGGGCCTTGG    506
                     ||.||.||||||||.||||||||.||.||.|||.||||.||.||.||.||
BPUM_0913___y    463 ATTGCACAGGAATTTAATTATGACGTAAATGGACTTGTGGCAGGTCTCGG    512

BSNT_01653___    507 TCTTGGCGGACTGGCTTTTGCGCTTGCCGCGAAGGATACCATCAGC-AAC    555
                     |||.||.||.||.||||||||.|||||.||..|||||||..| .|| |||
BPUM_0913___y    513 TCTGGGTGGTCTAGCTTTTGCACTTGCTGCACAGGATACGGT-GGCGAAC    561

BSNT_01653___    556 TTCTTTGGCGGTATTATCATTATTACTGAAAAGCCGTTTACAATTGGTGA    605
                     ||.|||||.||.||..||||||||||.||.|||||.|||||.||.||.||
BPUM_0913___y    562 TTTTTTGGAGGGATCGTCATTATTACAGAGAAGCCTTTTACGATGGGCGA    611

BSNT_01653___    606 CTGGGTGGAGACGTCGACAGTAACA----------GGATCAGTCGAGGAT    645
                     ||..||||||||         |.||          ||| |.||||||||.
BPUM_0913___y    612 CTTTGTGGAGAC---------ACCAAGTGTTCTTGGGA-CTGTCGAGGAC    651

BSNT_01653___    646 ATTACCTTTAGGAGCACGAGATTCAGAACAGCACAGGGGGCGCTTGTAAC    695
                     |||||.|||.|.||.||.|..||.||||||.|....|..||..|.||.||
BPUM_0913___y    652 ATTACATTTCGAAGTACAAAGTTTAGAACACCTGCTGAAGCTGTCGTGAC    701

BSNT_01653___    696 GGTCCCGAACTCTACGCTGTCGATGGAAGCGATCACGAACTGGACAAGAA    745
                     .||.|||||.||||||||.||.|.||||.|.||||||||||||||.||||
BPUM_0913___y    702 AGTTCCGAATTCTACGCTTTCAAAGGAACCAATCACGAACTGGACGAGAA    751

BSNT_01653___    746 TGACTAAACGCCAGATTACGTTTTCCATCCATGTGTCCTACGCTACGCCG    795
                     |||.|||||||||.||.|||||||||.|.|.|||.||||||..|||.||.
BPUM_0913___y    752 TGAATAAACGCCAAATAACGTTTTCCGTACGTGTATCCTACAATACACCA    801

BSNT_01653___    796 ATTGAGAACCTTGAACGCTCCATTCATTCTCTCA--------GAAC-AAT    836
                     |..|| ||..|||.||        ||||.|.|||        .||| |||
BPUM_0913___y    802 AAGGA-AAATTTGGAC--------CATTGTATCAAGCGACTTAAACAAAT    842

BSNT_01653___    837 GCTCTTA-GAGCATGAGGGCGTTGATAATGAAACAATCATGGTCAACTTT    885
                     ||| |.| ||||||||.||.||..|.||.||.|||||||||||.||..|.
BPUM_0913___y    843 GCT-TGATGAGCATGATGGGGTACACAAGGAGACAATCATGGTGAATCTC    891

BSNT_01653___    886 GATACGT--TTGCCGACAGCTACTACAATTTATTTTTTAACTTCTATACA    933
                     |||  ||  |.||.|||||.||.|..|||||||||||.|||||.||.|||
BPUM_0913___y    892 GAT--GTACTGGCAGACAGTTATTTGAATTTATTTTTCAACTTTTACACA    939

BSNT_01653___    934 AAAACGACAGTTTGGGCTGAAAACCTTAATATTAGAGAGGATATCAACTA    983
                     ||.|||||.||.||||||||||||||.|||||.|.|.||||.||.|||||
BPUM_0913___y    940 AACACGACGGTCTGGGCTGAAAACCTGAATATCAAACAGGACATTAACTA    989

BSNT_01653___    984 TAAAATTATTGAGATTTTAGGTGCAGAAGGTGTCCAGTTTGCATATCCC-   1032
                     ....||.||.||.||.||...||.|||||||||..|.|||||.| |||| 
BPUM_0913___y    990 CCGTATCATGGATATCTTCCATGAAGAAGGTGTAGAATTTGCCT-TCCCT   1038

BSNT_01653___   1033 GGCCAAATGGTTGTTGTCAAGCAAAAGCACGAAAGCGACCCATTCCAGGT   1082
                     ||.||                               ||||..||.||  |
BPUM_0913___y   1039 GGACA-------------------------------GACCATTTACA--T   1055

BSNT_01653___   1083 GAATCTAAATAAAGAGGAAAAGGAACGGGCT-------TAA   1116
                     |||   |.|.||||..|||||..|    |||       |||
BPUM_0913___y   1056 GAA---ACAAAAAGGTGAAAAACA----GCTGAGTGAATAA   1089


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.