Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01653 and BPUM_0913
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:09
# Commandline: needle
# -asequence dna-align/BSNT_01653___yhdY.1.24716.seq
# -bsequence dna-align/BPUM_0913___yhdY.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01653___yhdY-BPUM_0913___yhdY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01653___yhdY-BPUM_0913___yhdY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01653___yhdY
# 2: BPUM_0913___yhdY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1191
# Identity: 763/1191 (64.1%)
# Similarity: 763/1191 (64.1%)
# Gaps: 177/1191 (14.9%)
# Score: 2340.0
#
#
#=======================================
BSNT_01653___ 1 --------------ATGCCGGAT---TATCTGCAGCAGTATTTTACGCTT 33
|| |||| || || ||||||||..|.
BPUM_0913___y 1 ATGTTTACACAAAAAT---GGATGGATA-------CA-TATTTTACAGTA 39
BSNT_01653___ 34 GATAACATCATACAAATCGGCATCAG-CTTGGCGATTTTGCTGGTGTTTC 82
|||......||.||||||||.||.|| |||.| .|||||..||.| |||.
BPUM_0913___y 40 GATGTTGCGATCCAAATCGGTATTAGTCTTTG-TATTTTATTGCT-TTTT 87
BSNT_01653___ 83 TTA-TACTGAGAAAATTATTCAC-AAGATATTTCTTT-AACTTGCTTTTT 129
||| |.||..|.|||.||||.|| ||| ||.||.||| |.||| ||.|||
BPUM_0913___y 88 TTATTGCTTCGGAAAGTATTTACGAAG-TACTTATTTCATCTT-CTCTTT 135
BSNT_01653___ 130 AATTTGACAAACCGGCCGAAAACAGAAATTTTTAAACAGGTGGTTCTGGC 179
|...||||.||.|||.|.|||||.||..|..||||.||..|.|||.||||
BPUM_0913___y 136 AGGCTGACCAATCGGTCTAAAACGGAGGTCATTAATCAAATTGTTGTGGC 185
BSNT_01653___ 180 GTTTGATAAGCCGGCCAGATGGTTTTTTGTTGCCCTTGGGCTGTTTTTAG 229
.||.||.||.||.||||||...||||||||.||.||||||.|.|.|||.|
BPUM_0913___y 186 ATTCGAAAAACCAGCCAGACTTTTTTTTGTCGCACTTGGGTTATATTTTG 235
BSNT_01653___ 230 CGAT----CCGGTATTCACCGTTTTTAGATGAGCA-AATACCG--GTCAT 272
||.| |.|| ||||.|..|| |||||| .|||..| |||||
BPUM_0913___y 236 CGTTAAGACAGG----CACCATACTT---TGAGCATCATATGGATGTCAT 278
BSNT_01653___ 273 CAGCAAAATATACCGCTC---------ACTGATTGTGGCGCTCTTGTGCT 313
||.||||.||||..|.|| |.||||..||.|| |
BPUM_0913___y 279 CATCAAATTATATAGATCCTCCATTATATTGATGCTGACG---------T 319
BSNT_01653___ 314 GGGGTCTTTGTAATTTGACCGCAACATCGTCGTTTATCTTCCATAAGGTG 363
||||.|||||||||||.||.|||.|.||.||.||..|.||.||.||.||.
BPUM_0913___y 320 GGGGGCTTTGTAATTTAACTGCAGCTTCTTCTTTCTTATTTCAAAAAGTA 369
BSNT_01653___ 364 AATCAGCGCTTCGAGCTT-------GACATGGATGACATTCTGGCCCCGT 406
|| |||||..|| ||.||||||||.|||.|.||.||||
BPUM_0913___y 370 AA-------TTCGAAATTTGAATTAGAAATGGATGATATTTTAGCGCCGT 412
BSNT_01653___ 407 TTTTATCCAAATTGCTCCGTTTTGTGATCATTGCGCTCAGTGTCAGTGTG 456
|||||||.||..||.|.||.||..|.||||||||.||||||.|.|||||.
BPUM_0913___y 413 TTTTATCGAAGGTGTTTCGCTTCATTATCATTGCACTCAGTATTAGTGTC 462
BSNT_01653___ 457 ATCGCTCAGGAATTCAATTATGATGTCAACGGATTTGTAGCGGGCCTTGG 506
||.||.||||||||.||||||||.||.||.|||.||||.||.||.||.||
BPUM_0913___y 463 ATTGCACAGGAATTTAATTATGACGTAAATGGACTTGTGGCAGGTCTCGG 512
BSNT_01653___ 507 TCTTGGCGGACTGGCTTTTGCGCTTGCCGCGAAGGATACCATCAGC-AAC 555
|||.||.||.||.||||||||.|||||.||..|||||||..| .|| |||
BPUM_0913___y 513 TCTGGGTGGTCTAGCTTTTGCACTTGCTGCACAGGATACGGT-GGCGAAC 561
BSNT_01653___ 556 TTCTTTGGCGGTATTATCATTATTACTGAAAAGCCGTTTACAATTGGTGA 605
||.|||||.||.||..||||||||||.||.|||||.|||||.||.||.||
BPUM_0913___y 562 TTTTTTGGAGGGATCGTCATTATTACAGAGAAGCCTTTTACGATGGGCGA 611
BSNT_01653___ 606 CTGGGTGGAGACGTCGACAGTAACA----------GGATCAGTCGAGGAT 645
||..|||||||| |.|| ||| |.||||||||.
BPUM_0913___y 612 CTTTGTGGAGAC---------ACCAAGTGTTCTTGGGA-CTGTCGAGGAC 651
BSNT_01653___ 646 ATTACCTTTAGGAGCACGAGATTCAGAACAGCACAGGGGGCGCTTGTAAC 695
|||||.|||.|.||.||.|..||.||||||.|....|..||..|.||.||
BPUM_0913___y 652 ATTACATTTCGAAGTACAAAGTTTAGAACACCTGCTGAAGCTGTCGTGAC 701
BSNT_01653___ 696 GGTCCCGAACTCTACGCTGTCGATGGAAGCGATCACGAACTGGACAAGAA 745
.||.|||||.||||||||.||.|.||||.|.||||||||||||||.||||
BPUM_0913___y 702 AGTTCCGAATTCTACGCTTTCAAAGGAACCAATCACGAACTGGACGAGAA 751
BSNT_01653___ 746 TGACTAAACGCCAGATTACGTTTTCCATCCATGTGTCCTACGCTACGCCG 795
|||.|||||||||.||.|||||||||.|.|.|||.||||||..|||.||.
BPUM_0913___y 752 TGAATAAACGCCAAATAACGTTTTCCGTACGTGTATCCTACAATACACCA 801
BSNT_01653___ 796 ATTGAGAACCTTGAACGCTCCATTCATTCTCTCA--------GAAC-AAT 836
|..|| ||..|||.|| ||||.|.||| .||| |||
BPUM_0913___y 802 AAGGA-AAATTTGGAC--------CATTGTATCAAGCGACTTAAACAAAT 842
BSNT_01653___ 837 GCTCTTA-GAGCATGAGGGCGTTGATAATGAAACAATCATGGTCAACTTT 885
||| |.| ||||||||.||.||..|.||.||.|||||||||||.||..|.
BPUM_0913___y 843 GCT-TGATGAGCATGATGGGGTACACAAGGAGACAATCATGGTGAATCTC 891
BSNT_01653___ 886 GATACGT--TTGCCGACAGCTACTACAATTTATTTTTTAACTTCTATACA 933
||| || |.||.|||||.||.|..|||||||||||.|||||.||.|||
BPUM_0913___y 892 GAT--GTACTGGCAGACAGTTATTTGAATTTATTTTTCAACTTTTACACA 939
BSNT_01653___ 934 AAAACGACAGTTTGGGCTGAAAACCTTAATATTAGAGAGGATATCAACTA 983
||.|||||.||.||||||||||||||.|||||.|.|.||||.||.|||||
BPUM_0913___y 940 AACACGACGGTCTGGGCTGAAAACCTGAATATCAAACAGGACATTAACTA 989
BSNT_01653___ 984 TAAAATTATTGAGATTTTAGGTGCAGAAGGTGTCCAGTTTGCATATCCC- 1032
....||.||.||.||.||...||.|||||||||..|.|||||.| ||||
BPUM_0913___y 990 CCGTATCATGGATATCTTCCATGAAGAAGGTGTAGAATTTGCCT-TCCCT 1038
BSNT_01653___ 1033 GGCCAAATGGTTGTTGTCAAGCAAAAGCACGAAAGCGACCCATTCCAGGT 1082
||.|| ||||..||.|| |
BPUM_0913___y 1039 GGACA-------------------------------GACCATTTACA--T 1055
BSNT_01653___ 1083 GAATCTAAATAAAGAGGAAAAGGAACGGGCT-------TAA 1116
||| |.|.||||..|||||..| ||| |||
BPUM_0913___y 1056 GAA---ACAAAAAGGTGAAAAACA----GCTGAGTGAATAA 1089
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