Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01648 and BPUM_0909
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:09
# Commandline: needle
# -asequence dna-align/BSNT_01648___ccrB.1.24716.seq
# -bsequence dna-align/BPUM_0909___ccrB2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01648___ccrB-BPUM_0909___ccrB2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01648___ccrB-BPUM_0909___ccrB2.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01648___ccrB
# 2: BPUM_0909___ccrB2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 440
# Identity: 253/440 (57.5%)
# Similarity: 253/440 (57.5%)
# Gaps: 106/440 (24.1%)
# Score: 585.0
#
#
#=======================================
BSNT_01648___ 1 ATGAAAATATATAGCGCGGTTTTTATCGGAGGCGCGCTTGGCGCC----T 46
||||||...|||...||.||.|||||.||.||...|.|||| |.| |
BPUM_0909___c 1 ATGAAAGCTTATCTTGCCGTATTTATTGGCGGACTGATTGG-GACACTTT 49
BSNT_01648___ 47 GCCTCCGATACGGATTAAACTTATGGATACACACCG--GTCAG------- 87
| |.|||| |.||||| |..||..|.| |||||
BPUM_0909___c 50 G---CAGATA-----TGAACTT----AGCCAATCTGTTGTCAGCCAAACA 87
BSNT_01648___ 88 TTCCCGGCGGCAAC-CTGGCTGGAAAATGCGGCAGGCAGCCTTCTATTAG 136
||.||....||||| || ..|.|||||||.|||||||||.||.||..|.|
BPUM_0909___c 88 TTTCCTTATGCAACACT-AATCGAAAATGTGGCAGGCAGTCTGCTTCTTG 136
BSNT_01648___ 137 GCATTTTGACCGGATTTTTTATGATCGGGGCAAAACGG-------CCTCT 179
|..|||..||.||||.|||||||.|| |||||..| ..|||
BPUM_0909___c 137 GTTTTTCAACAGGATATTTTATGTTC----CAAAAGAGAAAAAAATATCT 182
BSNT_01648___ 180 GCTGTCGGCTTTTTTAGGCACCGGCTTTTGCGGAGGCTTCACAACAATGT 229
|| |.|||||..|.||.||.||.||||||||||||||.||.|||||||
BPUM_0909___c 183 --TG-CCGCTTTGATCGGAACAGGATTTTGCGGAGGCTTTACGACAATGT 229
BSNT_01648___ 230 CCACGTTTTCTAAGGAAACGGTGATGCTTTTGCAAGGACA-ACCCTCATT 278
||||.||||||||.||||| .||.||||| |..||| || |.
BPUM_0909___c 230 CCACTTTTTCTAAAGAAAC---AATTCTTTT---ATTACAGAC-----TG 268
BSNT_01648___ 279 GGCTCT----TTTATATGTGGCAGCCT-CAT--TGATATCAGGGATCATA 321
|||..| ||||..|||| .||| ||| ||.|.|||| |||
BPUM_0909___c 269 GGCAATTCACTTTAAGTGTG---ACCTACATCCTGCTCTCAG---TCA-- 310
BSNT_01648___ 322 TTTGCACTGATTGGTG-----TTTTTGCGGGAC---GGCGCATAGCAGGC 363
|||| |.||||.|.| .||.|| .|||| .|| ||||
BPUM_0909___c 311 -TTGC-CGGATTAGCGGCTGCCTTATG-TGGACTAATGC---TAGC---- 350
BSNT_01648___ 364 ATTCAGCAAAGAAAGGGGCTGC-----AGGAAAGATGA-- 396
||||| |||| | |.||||.|.|.
BPUM_0909___c 351 --TCAGC---------GGCT-CTTTCAACGAAATAAGTAG 378
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