Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00394 and BPUM_0907
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:17
# Commandline: needle
# -asequence dna-align/BSNT_00394.1.24716.seq
# -bsequence dna-align/BPUM_0907.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00394-BPUM_0907.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00394-BPUM_0907.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00394
# 2: BPUM_0907
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 480
# Identity: 254/480 (52.9%)
# Similarity: 254/480 (52.9%)
# Gaps: 135/480 (28.1%)
# Score: 566.0
#
#
#=======================================
BSNT_00394 1 ATGTATACACTT---CAAGAAA---TTAGTAAACCTAA--AAGAAAAAAA 42
||| ||| .|.|||| ..|||| |.| .|||||||||
BPUM_0907 1 ATG------CTTTGGTATGAAACAGCGAGTA----TCACGGAGAAAAAAA 40
BSNT_00394 43 C--TAGTGAAAAATATTGAGAAGCACTTAAAGAACTACAATAATTACAAA 90
| .|.|||||...||||||...||.||.|||||.|.|||.||||||.|.
BPUM_0907 41 CCTCAATGAAACGAATTGAGTTTCATTTGAAGAATTTCAAAAATTACCAG 90
BSNT_00394 91 GTTGCCATCCTTAATCT---AAGTAAACAGCTTGAATTCATAGCTACAAA 137
|..||.||..|.|||.| ||| |||||||||| |||
BPUM_0907 91 GCGGCGATTTTAAATATCGAAAG---ACAGCTTGAA-----------AAA 126
BSNT_00394 138 TG--------ATAATATGGAAATCTTTAAAGAAAGCATCGATGATGACTG 179
.| ||.||.|||||..|.|.| ||..||.||
BPUM_0907 127 AGAAGTTCGCATCATTTGGAACACATGA-------CACGGAAGA------ 163
BSNT_00394 180 TGAGTTTCAGG--------AATCGGTGGATAAAC------TTGCCGGTGA 215
||||..|.| ||||.|| ||.||| |||| .||.
BPUM_0907 164 --AGTTAGAAGAGCAAAAAAATCAGT--ATGAACTCATCGTTGC--TTGT 207
BSNT_00394 216 GTTGCAACATATCAAACTTCTAAAAGA-TTCAAT-CGATATTTCATTATC 263
.|||.||| |.|| |||||||| ||..|| .|||| .
BPUM_0907 208 ATTGAAAC--AGCA-----CTAAAAGAGTTGGATGAGATA---------G 241
BSNT_00394 264 AGAATTAACAGAAC-TAGAGTACAGATTTGTTCAATACCGTTATTTTAAA 312
||| |.|||..| |.||.|||| ||||| |||..|
BPUM_0907 242 AGA---AGCAGCTCATCGATTACA---------AATAC------TTTCGA 273
BSNT_00394 313 AATTGGACCATTGAAAAAAGTGCACTAGAGATCGGTTATAGTGATAAAGC 362
.|||||...||.|..||..||||..|.||.|||||.||||||||.|||.|
BPUM_0907 274 GATTGGCGGATGGCCAAGTGTGCGATGGAAATCGGCTATAGTGAAAAAAC 323
BSNT_00394 363 ACTGTTTGTAAT---ACGTAATCAGGTAATGGATAAATTATTGATCAGCT 409
.||.|||.|||| ||| .|||.|.||||||.||.|..|.||.||||
BPUM_0907 324 TCTTTTTTTAATGAAACG---CCAGCTTATGGATCAACTGCTCATTAGCT 370
BSNT_00394 410 TAGGGAGCG-------TTGTTTACATGTAA 432
|| |..||| .||||||.
BPUM_0907 371 TA-GCTGCGATAACCAATGTTTAA------ 393
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