Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01642 and BPUM_0905
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:08
# Commandline: needle
# -asequence dna-align/BSNT_01642.1.24716.seq
# -bsequence dna-align/BPUM_0905___cueR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01642-BPUM_0905___cueR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01642-BPUM_0905___cueR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01642
# 2: BPUM_0905___cueR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 583
# Identity: 317/583 (54.4%)
# Similarity: 317/583 (54.4%)
# Gaps: 179/583 (30.7%)
# Score: 946.5
#
#
#=======================================
BSNT_01642 1 ATGTTACTTCAATCAGATGATGAATTCCACAACTTCCAATTCCGGTCTGA 50
BPUM_0905___c 0 -------------------------------------------------- 0
BSNT_01642 51 AAAAAACAATAAACTTGTGCAAGACACCGTTCATATATTAAACTATTCTC 100
BPUM_0905___c 0 -------------------------------------------------- 0
BSNT_01642 101 ATAACTATAACGTGATGGTTGGGAGG-GATAT--AGATGGGGCTGAG--- 144
||||.||||.||||| |||.| |||||||||||||
BPUM_0905___c 1 -----------GTGACGGTTAGGAGGAGATGTTCAGATGGGGCTGAGAAA 39
BSNT_01642 145 ACTTATCGCATCAGTGAACTAGC------GGCACTCGCCGGA-GTAACGA 187
|..|||||.||..|||||||||| .|||| | ||.||||
BPUM_0905___c 40 AAGTATCGTATTGGTGAACTAGCACAGATTGCAC-------AGGTGACGA 82
BSNT_01642 188 AACGGACAGTTGATTATTATACGAATCTCGGTCTGCTTACGCCGGCCAGA 237
||||.||.||.|||||||||||.|||||.||..|||||.||||.|..|||
BPUM_0905___c 83 AACGTACTGTAGATTATTATACAAATCTAGGGTTGCTTGCGCCTGTTAGA 132
BSNT_01642 238 TCCTGTTCAAATTACCGTTACTACGACGAAAATGCACTCAAACGACTTA- 286
||.||.||||||||.|||||.|||||.|||.||||..|.|||||| |||
BPUM_0905___c 133 TCTTGCTCAAATTATCGTTATTACGATGAACATGCTTTAAAACGA-TTAC 181
BSNT_01642 287 TATTTATTGTAGATTGCAAGAAGCAGCGATTGGCCCTGTCCGATATTAAA 336
.|||.||.||...||||||..|||||.|||||||.||.||.||.||.||
BPUM_0905___c 182 AATTAATCGTTCTTTGCAAACAGCAGAGATTGGCTCTTTCTGACATCAA- 230
BSNT_01642 337 GATC--GACTGGA-GAACCAGTTTCCCTCTTCAGCTAAA-----CTTGAT 378
||| ||.|.|| ||||.| ||||||..||| ||| ||| .|
BPUM_0905___c 231 -ATCCAGATTAGATGAACAA--TTCCCTTCTCA---AAAGGAAGCTT-CT 273
BSNT_01642 379 GATGAAATTGGAAATCTGGCATT-------AGAAATTGATCATATGAATC 421
||||||.||| || |||| .||.||.||||..|||||..
BPUM_0905___c 274 GATGAACTTG----TC---CATTTAACCTCTGATATCGATCGGATGAACG 316
BSNT_01642 422 AAAACATCTCCGGA----ATCTTGCATCGGTTTGAACGGC-TGAAGCCCG 466
|..|.|| ||| ||.|||...||.|.|.|.|.|| |||| ||.|
BPUM_0905___c 317 AGCATAT----GGACCGCATTTTGGTACGTTGTAAGCAGCTTGAA-CCAG 361
BSNT_01642 467 AGGATCGTGACAAGCTGAAAAGCA-AACTCCCGCCTGAAAAGCTCGCCG- 514
|..|.||||| ||..|.|||||.| |.||..|.|||||.|||.| |.||
BPUM_0905___c 362 AACAACGTGA-AAAATTAAAAGAACAGCTTACACCTGAGAAGAT-GACGG 409
BSNT_01642 515 -TGTTCCAATCATTTATGCTGCTGTTAAGTTAA 546
|| |||||||||||.|.|||||||||||||||
BPUM_0905___c 410 CTG-TCCAATCATTTTTACTGCTGTTAAGTTAA 441
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