Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01637 and BPUM_0901
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:08
# Commandline: needle
# -asequence dna-align/BSNT_01637___yhdL.1.24716.seq
# -bsequence dna-align/BPUM_0901___yhdL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01637___yhdL-BPUM_0901___yhdL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01637___yhdL-BPUM_0901___yhdL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01637___yhdL
# 2: BPUM_0901___yhdL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1186
# Identity: 718/1186 (60.5%)
# Similarity: 718/1186 (60.5%)
# Gaps: 236/1186 (19.9%)
# Score: 2070.5
#
#
#=======================================
BSNT_01637___ 1 ---ATGAATGAAGAATTTAAAAAGCGTTTTGATCAATATAAAAATGGGGA 47
|||||||||||.|||||.|||||.|..||.||||||||.|||||.||
BPUM_0901___y 1 ATGATGAATGAAGAGTTTAACAAGCGATGGGAACAATATAATAATGGTGA 50
BSNT_01637___ 48 AATGAGCGACCAGGAAATGACTGCATTTGAGGAAGAACTTGAGAAG--CT 95
.||||.|||..|.|||||||..||.|||||.|||||.|| ||||| ..
BPUM_0901___y 51 GATGAACGAGGAAGAAATGATGGCTTTTGAAGAAGAGCT--AGAAGAAAA 98
BSNT_01637___ 96 CGAA------GTATATCAGGAACTGATTGACAGCGAACTAGAGGACGATA 139
|||| .||..|||||||||||..||| .||.|.| ||||
BPUM_0901___y 99 CGAAAAACGCTTAAGTCAGGAACTGAACGAC-TCGGATT---GGAC---- 140
BSNT_01637___ 140 ACGATTGGGATCTCAGCATCAGTCCTGAAAAACAAAAAGCGATTTTAGCC 189
||||| |.|| .||||||||||||||.||||||||.||.|||...
BPUM_0901___y 141 -CGATT----TTTC--TATCAGTCCTGAAAAGCAAAAAGCCATCTTACAA 183
BSNT_01637___ 190 TACGGCAAACGCAAGTCTTATTTGCGAATTTCTGTGCTTGCCGTCATTTC 239
|||||.|||.|.|||||||||||.||.||||||||.|||||.|||||.||
BPUM_0901___y 184 TACGGAAAAAGAAAGTCTTATTTACGTATTTCTGTACTTGCTGTCATCTC 233
BSNT_01637___ 240 GACATTGATGATTTTGCCGCTTTGTACGCTGGGAAGCTACCTCTATTACG 289
.||..|.||.|||||.|||||||||||..|.|||||.||.||.||.||||
BPUM_0901___y 234 TACTCTTATTATTTTACCGCTTTGTACATTAGGAAGTTATCTATACTACG 283
BSNT_01637___ 290 GAATGGGTGGGAAACACAGCACCGGCAATGAGTTTATGGAAACTGCCGCA 339
|..|.||.||...|.|.||.|..||.|||.|.||.||||||||.||.||.
BPUM_0901___y 284 GTGTTGGCGGAGCAGAGAGTAAAGGAAATCACTTCATGGAAACAGCTGCT 333
BSNT_01637___ 340 GTCACTGTAGCCCTGACCATGCCGAATGTTCTTG----TTGATACTTCCG 385
||.||.||.||..||||.|..||.|| |.|| |||||| |...|
BPUM_0901___y 334 GTAACAGTCGCTTTGACGAAACCAAA----CGTGGCGATTGATA-TGAAG 378
BSNT_01637___ 386 GACTGAAAA-GCCAAGTGAAGCTATTTGGAATGAATACGGAATTCCCGCT 434
||.|.|||| |||||||.|||||.|||||||||||.||.|||||...|||
BPUM_0901___y 379 GATTTAAAAGGCCAAGTCAAGCTTTTTGGAATGAACACCGAATTGAAGCT 428
BSNT_01637___ 435 GCAAAAGCAGATTGGCACGAAGACGGCTGCCGTAGGGAATGAACGGGTTG 484
||||||.||.|||||||..||.||.|..|||.|.||.|.|||||...|.|
BPUM_0901___y 429 GCAAAAACAAATTGGCAATAAAACAGAAGCCATTGGCAGTGAACAAATCG 478
BSNT_01637___ 485 AAATGTTTTATAACAAAGTAAAAGCGCCGGCAGTAAACTACTATGACTTA 534
|.|||||||...|.|||.|||| |||| .||||.||..|.||
BPUM_0901___y 479 AGATGTTTTTCGATAAATTAAA-------GCAG---CCTACGATTTCATA 518
BSNT_01637___ 535 GAA--GTGA-----------ATATAACCGG-CCATTACTTTACACATCCT 570
..| |||| ||| ||| ..|||.||||||.||||||
BPUM_0901___y 519 TTATGGTGACAGCTCACGTGATA----CGGAGGATTTCTTTACCCATCCT 564
BSNT_01637___ 571 TCAAACAAGTCTGAACAAACGACCGCAAAAGCA--GAAAAAACGTTAAGC 618
||.|...|| |||.|.||| .||||||| ||
BPUM_0901___y 565 TCTACTCAG---------------GCAGATGCATCTAAAAAAC---AA-- 594
BSNT_01637___ 619 ACATTG------------------CCTGAAGGAACGGTATCA--GAGGTC 648
|||.|| |||||||||||.| ||| ||.||.
BPUM_0901___y 595 ACACTGACTACTTTAGACAAGCTTCCTGAAGGAACAG--TCAGTGAAGTG 642
BSNT_01637___ 649 TACCTTTCATATGACCGTGCATATCCGACAAAAGACGTGTA--------- 689
||..||||.||||||...||||||.|..||||.|||||.||
BPUM_0901___y 643 TATGTTTCCTATGACAAAGCATATACACCAAAGGACGTTTATTCCTTTGC 692
BSNT_01637___ 690 TAACAAATTCAAAGGCTATGATGTGA----GCTTTTTGTGGAACGCAATC 735
|||.||| ||||||.||| || |.|||||.||.||.
BPUM_0901___y 693 TAAAAAA---------TATGATATGAAAGTGC----TCTGGAATGCGATT 729
BSNT_01637___ 736 GAAACAGAGAA------AAACACAAATAAGACAGCTTCCACAGAACCTCT 779
.||||||||.| ||.....||| ||||..||| .|
BPUM_0901___y 730 AAAACAGAGGATTCTTTAAGTGGGAAT----CAGCGGCCA--------AT 767
BSNT_01637___ 780 TGGCTATCCTGGAAAGGATTCAAAGTTCTTGGCCGCCCTTAATACAAAAG 829
|||||.||||||.|..||.||..|.||||| |||||
BPUM_0901___y 768 TGGCTTTCCTGGGAGAGACTCTGAATTCTT---------------AAAAG 802
BSNT_01637___ 830 -------GCA------------AGTCGAATGGCGATCAGTTTATCAACGC 860
||| || |.|.||||||.||||...|.||
BPUM_0901___y 803 AACTTCAGCACACATCAAAAACAG----AGGTCGATCAATTTAAAGATGC 848
BSNT_01637___ 861 CCTAAAATTCATGTCCA--AACACGAAAAATGGGCTCAGGTCATTTCAAA 908
||| .|.|.|.|||.| |.|||..||..||||| .|||
BPUM_0901___y 849 CCT--TACTTACGTCAATCAGCACCCAACCTGGGC-----------AAAA 885
BSNT_01637___ 909 ACG------GAAAGACCTGAA-TGTAGAT------AACCGATTAGATTAT 945
||| |..||||||||| || ||| ||||||.||...|||
BPUM_0901___y 886 ACGATCTCTGGCAGACCTGAACTG--GATCTGTCAAACCGAATACGCTAT 933
BSNT_01637___ 946 GTAGAGAAAAACGGTGT--CAATGTATACGGTTCGGTCGTTACAGGGCCA 993
.|..|..||||.||||| |.||.||| ||.||.||..|.|||||.||.
BPUM_0901___y 934 ATCAACCAAAATGGTGTTACGATTTAT--GGCTCTGTGATCACAGGTCCT 981
BSNT_01637___ 994 ACCAAGGAAATCCAGCGCA----TGCTGAA-AAATAAATCTGTAAAATCA 1038
.|.||.||||||.|| | || |||| |.|.||..|..||||| |.
BPUM_0901___y 982 TCAAAAGAAATCGAG---AAATTTG-TGAAGACAAAACGCATTAAAA-CG 1026
BSNT_01637___ 1039 GCGAATGTCGGCGAGGTGGAATTATGGAACTGGTAA 1074
||.||.||..|||||||||||||||||||.||||||
BPUM_0901___y 1027 GCAAAAGTGAGCGAGGTGGAATTATGGAATTGGTAA 1062
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