Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02196 and BPUM_0894
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:39
# Commandline: needle
# -asequence dna-align/BSNT_02196___hmp.1.24716.seq
# -bsequence dna-align/BPUM_0894___hmp.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02196___hmp-BPUM_0894___hmp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02196___hmp-BPUM_0894___hmp.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02196___hmp
# 2: BPUM_0894___hmp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1411
# Identity: 751/1411 (53.2%)
# Similarity: 751/1411 (53.2%)
# Gaps: 422/1411 (29.9%)
# Score: 1604.0
#
#
#=======================================
BSNT_02196___ 1 ATGTTAGATAACAAAACAATCGAAAT--TATTAAA-----AGCACTGTAC 43
||||||..||| |.|.|||..| ||| ||||||| ||| |
BPUM_0894___h 1 ATGTTATCTAA-AGATCAAATG-AATGCTATTAAACAATCAGC------C 42
BSNT_02196___ 44 CC-GTATTGCAACAGCATGGAGAAACAATCAC---TGGCCGTTTTT---- 85
|| .|||| ||.|||...|.|||.||| || ||.|.||||||
BPUM_0894___h 43 CCTCTATT--AAAAGCCGAGGGAACCAA--ACTTGTGACTGTTTTTTATC 88
BSNT_02196___ 86 ACGATCGGATGTTTCAAGACCATCCAGAGCTTTTGAA-CATTTTTAATCA 134
|..|| |||.|||...|.|||||||||||..|.|| || .||||||.|
BPUM_0894___h 89 AAAAT---ATGATTCGTCAGCATCCAGAGCTACTCAATCA-ATTTAATAA 134
BSNT_02196___ 135 AACAAACCAAAAGAAAAAAACACAGCGA------ATTGCTCTGGCAAATG 178
||||||||..|.|||...||..||||.| .||||| ||||
BPUM_0894___h 135 AACAAACCTCATGAACGGAAGTCAGCCAGAGGCGCTTGCT---GCAA--- 178
BSNT_02196___ 179 CCGTTAT-------TGCAGCTGCGGCAAACATTGACCAATTAGGAAACAT 221
|..||| |||| |||| ||||.||.|.|||| |||..||
BPUM_0894___h 179 -CACTATACCAAGCTGCA-CTGC-----ACATCGATCGATTA-GAAGAAT 220
BSNT_02196___ 222 CA-TTCCGGTTGTCAAACAAATCGGCCACAAGCACCGCAGT---ATCGG- 266
.| |.||.||.||.|||||.||||.|||.|||||...|||| || ||
BPUM_0894___h 221 TACTCCCTGTGGTTAAACAGATCGCCCATAAGCATGTCAGTGTGAT-GGT 269
BSNT_02196___ 267 -AATTAAGCCTGAGCACTACCCAATCGTCGGTAAATATTTGCTGATT--- 312
||..|| |||||.||.||||||||||| ||||...||||||
BPUM_0894___h 270 CAAAAAA----GAGCAATATCCAATCGTCGG---ATATCACCTGATTGAA 312
BSNT_02196___ 313 GCGATTAAAGATGTATTGGG------------AGACGCTGCAACTCCTGA 350
|..||.|||||.||.||.|| ||| |||
BPUM_0894___h 313 GGAATGAAAGAAGTGTTTGGTTTAACGGAAAAAGA------------TGA 350
BSNT_02196___ 351 CA-----TTATGCAGGCATGGGAAAAAGCG---TACGGAGTCATTGCTGA 392
|| ||| ||.||| ||.||| ||.|...||||||| ||
BPUM_0894___h 351 CACGCTTTTA-----GCTTGG---AAGGCGGCATATGACATCATTGC-GA 391
BSNT_02196___ 393 ----CGCGTTCAT--CGGAATTGAAAAAGACATGTAT-GAACAGGCTGAA 435
| ||.|| || ||||||..|||.||| || ||..||..||.|
BPUM_0894___h 392 ATATC---TTTATTACG--ATTGAAGCAGAAATG-ATGGAGGAGAATGTA 435
BSNT_02196___ 436 GAGCAAGCCGGCGGCTGG-AAGGAGTATAAGCCATTCGCTATCGCAA-AA 483
.|.|||...|||||.||| .||..|| .||.||.||.|..|| .|| ||
BPUM_0894___h 436 AAACAAATAGGCGGATGGTCAGATGT-GAAACCGTTTGTGAT--TAAGAA 482
BSNT_02196___ 484 AAAGAGCGGGAAAGCAAAGAAAT-TACA---------TCCTTCTATTTGA 523
|||| |.|.||.||| |.|| |||||.|||||..
BPUM_0894___h 483 AAAG---------GTACAGGAATCTCCAGCGCTGATCTCCTTTTATTTAG 523
BSNT_02196___ 524 AACCAGAAGACGGCAA--------GCCGTTACCTGAATTCCAAGCAGGTC 565
.|||||||||.| || ||||.| .||..||||.||||
BPUM_0894___h 524 TACCAGAAGATG--AATCAGAGCTGCCGAT------GTTTGAAGCCGGTC 565
BSNT_02196___ 566 AATATAT-----------CAGCAT---CAAAGTGCGGATTCCTGATTTTG 601
||||||| ||| || |.|.|||.||.||
BPUM_0894___h 566 AATATATTACGGTTCAGGCAG-ATATGCCAGGTGAGGCTT---------- 604
BSNT_02196___ 602 AATATACGCA-TATCCGCCAGTACAGCCTGTCTGAT-------ATGCCGG 643
||||..||| || |.||.||||||.|.||.||| ||.|
BPUM_0894___h 605 -ATATGTGCAGTA---GACAATACAGCTTATCAGATCAGCATCATCC--- 647
BSNT_02196___ 644 GAAAAGACTATTATCGAATTTCAGTGAAGAAAGATGGTGTCGTGTCTTCC 693
|...|||||.||.|||.||||||||...||||||...||||||.|.
BPUM_0894___h 648 ----ATCTTATTACCGCATTACAGTGAAGCGCGATGGTCATGTGTCTACA 693
BSNT_02196___ 694 TACTTACACGATGGGCTGCAGGAGGGAGA-----TTCAATAGAG-ATCAG 737
|..||.||.||||...||.|.||.||||| |||||..||| ||
BPUM_0894___h 694 TTTTTGCATGATGAAATGGAAGAAGGAGACGTTCTTCAAGTGAGTAT--- 740
BSNT_02196___ 738 CGCGCCGGCAGGGGACTTTGTTTTAGATCATGCA-----TCACAAAAAGA 782
||| ||||||.| ||||.| .|.|||| .||| ||||||
BPUM_0894___h 741 ---GCC-GCAGGGAA---TGTTCT---GCTTGCAAGAAGACAC-AAAAGA 779
BSNT_02196___ 783 TCTCGT---TTTGATCAGTGCCGGAGTTGGCATTACACCAATGATCAGCA 829
.|..|| |||.||.|||||.||...||||.|.||.|||||||||.|..
BPUM_0894___h 780 GCCTGTTTATTTCATTAGTGCTGGTTCTGGCGTCACGCCAATGATCGGTT 829
BSNT_02196___ 830 TGTTGAAAACATCTGTTTCCAAACAGCC------TGAACGGCAAATTCTG 873
|.|||||||||.|.| ..|.||||||.| |.| |||
BPUM_0894___h 830 TATTGAAAACAGCAG-CGCAAAACAGTCATCCATTTA----CAA------ 868
BSNT_02196___ 874 TTCATTCATGCGG--CGAAAA---------ACAG----TGAATATCATGC 908
|.||||||||.| |||..| ||.| |||| ||||.
BPUM_0894___h 869 -TGATTCATGCAGATCGATTAGAGGATGTGACCGCCTTTGAA---CATGA 914
BSNT_02196___ 909 ATTGCGCCATGAGGTAGAAGAAGC-----AGCAAAACATTCTGCTGTTAA 953
||| ||| |||| |.|| ||.|||
BPUM_0894___h 915 ATT------TGA--------AAGCGTTCTATCA------TCAGCT----- 939
BSNT_02196___ 954 AACAGCAT------------TTGTGTA---------TCGCGAGCCGACAG 982
|.|||| ||.|||| |.||| |||
BPUM_0894___h 940 --CCGCATGGCCGCATCCTCTTATGTAATGAACAATTTGCG------CAG 981
BSNT_02196___ 983 -------AGGAAGACCGTGCAGGTGATCTGCATTTTCATGAAGGACAG-- 1023
|||.||| ||.|.||.|..||| |||
BPUM_0894___h 982 TCTGGTAAGGGAGA---------------GCTTGTTGAAAAAG--CAGCT 1014
BSNT_02196___ 1024 ------ATTGA----TCAGCAATTCCTCAAAGAACTGATTGCCAACACAG 1063
||||| || ||||||..||..|.||.||| .||
BPUM_0894___h 1015 TCCCGCATTGACCGTTC----ATTCCTTCAATCAGTGGTTG------GAG 1054
BSNT_02196___ 1064 ATGCGGA---------TTACTATATTTGTGGTTCACC-GTCGTTTATTAC 1103
|.| ||| || |||.|.||.|||||.|| || |||||....
BPUM_0894___h 1055 AAG-GGAAAGGTCAATTT--TATCTATGCGGTTCCCCTGT-GTTTACCGA 1100
BSNT_02196___ 1104 AGCAATG---CATAAGCTTGTATCAGAGCTCGGA--TCGGCGCCGG---A 1145
||..||| |||| |..||..||||.|.||| | ||.| |
BPUM_0894___h 1101 AGAGATGATTCATA---TACTAAAAGAGTTGGGAATT-----CCAGAACA 1142
BSNT_02196___ 1146 GTCTATCCATTACGAGCTATTCGGCCCGCAAT-----TAAG-TTTGGCGC 1189
|..|||.||||.|||...|||.||...||||| .||| ..|| |.
BPUM_0894___h 1143 GAATATTCATTTCGAATCATTTGGAGGGCAATCCACAAAAGAAATG--GA 1190
BSNT_02196___ 1190 AGTCCGTTTGA 1200
||| |||.|.|
BPUM_0894___h 1191 AGT-CGTCTAA 1200
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