Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01615 and BPUM_0893
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_01615___yhdE.1.24716.seq
# -bsequence dna-align/BPUM_0893___yhdE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01615___yhdE-BPUM_0893___yhdE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01615___yhdE-BPUM_0893___yhdE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01615___yhdE
# 2: BPUM_0893___yhdE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 462
# Identity: 302/462 (65.4%)
# Similarity: 302/462 (65.4%)
# Gaps: 51/462 (11.0%)
# Score: 903.5
#
#
#=======================================
BSNT_01615___ 1 ATGAAGTTAACCAATTATACAGATTATTCATTAAGAGTGTTGATTTTTCT 50
|||||..||||.||||||||.||||..|||||||||||..|.||||.|.|
BPUM_0893___y 1 ATGAAACTAACGAATTATACCGATTTCTCATTAAGAGTACTCATTTATTT 50
BSNT_01615___ 51 GGC-TGCAGAGCGTCCCGGA--GAACTTTCAAATATAAAACAGATTGCCG 97
.|| |..||||.|..| | |||||.||||||||..|.|||||.||||
BPUM_0893___y 51 AGCATCAAGAGAGAAC---AATGAACTGTCAAATATTCAGCAGATCGCCG 97
BSNT_01615___ 98 AAACGTATTCTATTTCAAAAAATCATCTCATGAAAGTCATATA-CAGGCT 146
|....|||...|||||.|||||||||||.|..||.||.||.|| || .||
BPUM_0893___y 98 ATGTTTATGACATTTCTAAAAATCATCTGACAAAGGTGATTTATCA-TCT 146
BSNT_01615___ 147 CGGCCAGCTCGGCTACGTAGAAACGATACGCGGACGGGGCGGCGGCATAC 196
.||..|.|.|||.||.|||||||||||.||.|||.|....|||||
BPUM_0893___y 147 TGGAAAACGCGGGTATGTAGAAACGATCCGTGGAAGAAATGGCGG----- 191
BSNT_01615___ 197 GATTAGGCATGGAA-----CCTGAAGACATCAACATCGGTGAGGTTGTCA 241
||||||||.|||.| ||.|||..|||.|||||.||.|||||||||.
BPUM_0893___y 192 GATTAGGCTTGGGAAAAGCCCAGAAAGCATTAACATTGGAGAGGTTGTCC 241
BSNT_01615___ 242 GAAAAACGGAGGACGATTTTAAT-ATTGTTGAATGTTTTGATGCGAATAA 290
|..|.||.|||||.|| ||||.| ||.||||||||.||||||.|.|..||
BPUM_0893___y 242 GTTATACAGAGGATGA-TTTAGTCATGGTTGAATGCTTTGATCCTAGGAA 290
BSNT_01615___ 291 GAATCTCTGTGTTATTTCCCCGGTTTGCGGCTTAAAACATGTGCTGAATG 340
.||...||||.|.||.||.|||.||||....|||||.|||||.||..|||
BPUM_0893___y 291 AAACAGCTGTATCATCTCTCCGATTTGTTCATTAAAGCATGTACTTCATG 340
BSNT_01615___ 341 AAGCGCTTTTGGCCTACCT-CGCAGTTTTAGACAAATACACACT----GC 385
||||.||.|..||.|||.| ||| |||.|.|||.||||||||.| |.
BPUM_0893___y 341 AAGCACTCTCTGCTTACTTGCGC-GTTCTTGACCAATACACATTAAAAGA 389
BSNT_01615___ 386 GCGACCTCGTCAAAAACAAAGAAGATATCATGA-AGCT-----TTTAAAA 429
...|.||| ||||||||||.|.|.|.| || |||| ||||.
BPUM_0893___y 390 TTTAACTC----AAAACAAAGATGCTCTTA-GAGAGCTCCTCCTTTAG-- 432
BSNT_01615___ 430 ATGAAGGAATAG 441
BPUM_0893___y 432 ------------ 432
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