Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01610 and BPUM_0890

See Amino acid alignment / Visit BSNT_01610 in genome browser / Return to Orthologue table

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:07
# Commandline: needle
#    -asequence dna-align/BSNT_01610___yhdB.1.24716.seq
#    -bsequence dna-align/BPUM_0890___yhdB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01610___yhdB-BPUM_0890___yhdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01610___yhdB-BPUM_0890___yhdB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01610___yhdB
# 2: BPUM_0890___yhdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 291
# Identity:     178/291 (61.2%)
# Similarity:   178/291 (61.2%)
# Gaps:          57/291 (19.6%)
# Score: 559.0
# 
#
#=======================================

BSNT_01610___      1 ---------------------------------ATGGATTATGCCGATTA     17
                                                      |||.||...||.|||||
BPUM_0890___y      1 ATGAGGACTTCTCAAGGGAAAGGAGAAGGTTTAATGAATGTGGCGGATTA     50

BSNT_01610___     18 CGATAAAGCGCTTTATTACACCCATCGTTCTCAATGGGATAATTTATTAA     67
                     .||||||||.||||||||.||.|||||.||.||.||||||||||||.|.|
BPUM_0890___y     51 TGATAAAGCACTTTATTATACGCATCGCTCGCAGTGGGATAATTTACTTA    100

BSNT_01610___     68 TTTTAATGGTGCGTACAGAGGACGATTTGTTATCAAAACGAATTGAGCAT    117
                     ||.|.|||||.|||||..|.||.||.|||.|.||.|||||.|||||||||
BPUM_0890___y    101 TTCTTATGGTACGTACGCAAGATGACTTGCTCTCGAAACGTATTGAGCAT    150

BSNT_01610___    118 TTTCTGCATGCGTATCATTTTGAACAGGATTAC---GCCGTTTTAGAAAA    164
                     ||..|.||.||||||||.||| |||.|||  ||   ||.|.|.|.|||||
BPUM_0890___y    151 TTCTTACACGCGTATCAATTT-AACCGGA--ACGATGCTGATGTTGAAAA    197

BSNT_01610___    165 GATG-CTGTATTCCCTTCTCCGTTATATTGATCATGCCACAGA----GCT    209
                      ||| .|.|||...||..|.|..||.|||||.|||||..||||    |||
BPUM_0890___y    198 -ATGTTTATATGGGCTCTTGCAGTACATTGACCATGCTTCAGAAGCTGCT    246

BSNT_01610___    210 GACTTATGAAGAT------CAAATAGCCCTTCT-CACATAA    243
                     | ||..|||||.|      |||    ||..|.| |||||||
BPUM_0890___y    247 G-CTGCTGAAGTTTATTCACAA----CCGATGTACACATAA    282


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