Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01607 and BPUM_0887
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_01607___yhcZ.1.24716.seq
# -bsequence dna-align/BPUM_0887___yhcZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01607___yhcZ-BPUM_0887___yhcZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01607___yhcZ-BPUM_0887___yhcZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01607___yhcZ
# 2: BPUM_0887___yhcZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 716
# Identity: 445/716 (62.2%)
# Similarity: 445/716 (62.2%)
# Gaps: 133/716 (18.6%)
# Score: 1257.0
#
#
#=======================================
BSNT_01607___ 1 ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAG-AAAGGGTCTGC 49
||||.|.||||||||||.||||||||||||.||||.|| ||||||..||.
BPUM_0887___y 1 ATGAGAGTTGTCATTGCAGATGATCATCATATTGTGAGAAAAGGGCTTGT 50
BSNT_01607___ 50 GTTTTTTCTTTGCC--ACCCAGGATGATATTGAAGTCGTCGGAGAAGCTG 97
||||||.|| || ||.|||..|||..|||||.||||.||.||.|||.
BPUM_0887___y 51 GTTTTTCCT---CCAGACACAGCCTGACGTTGAAATCGTTGGTGAGGCTT 97
BSNT_01607___ 98 CAACCGGAATAGAAGCTCTCCGTGTCA-TCGAA-----GAGACAAA---- 137
|.|..|||..||||| || |.||| .||.||||
BPUM_0887___y 98 CTAATGGAGAAGAAG----------CATTAGAAATTGTTAGGCAAACGCG 137
BSNT_01607___ 138 GCCGGATCTTGTGCTAATGGATCTGTCTATGCCCGAGATGGACGGCATTC 187
|||.||..|.||.||.||||||||.||.|||||.|..|||.|.||||||.
BPUM_0887___y 138 GCCTGACATCGTTCTCATGGATCTATCAATGCCTGTAATGAATGGCATTG 187
BSNT_01607___ 188 AAGCCATTAAAAAAGCAAT-ACAGC---AATTTCCGGATA--CGAATATC 231
|.||.|..|||.| ||| || || ||.|.||.|||| || |
BPUM_0887___y 188 AGGCAACGAAACA---AATGAC-GCTGGAAATGCCTGATACCCG-----C 228
BSNT_01607___ 232 ATTGTG---CTGACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCT 278
|||||| |||||.|||||..|.|||.|.||..|.||.|||||.||..|
BPUM_0887___y 229 ATTGTGATCCTGACAAGCTATGCGGATAAAGATTATGTTATCCCAGCCAT 278
BSNT_01607___ 279 TCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCCCGAGGAAT 328
|||.|||||.||.||.||.|||||..|.|||||| |.|||.|.||
BPUM_0887___y 279 TCAAGCAGGGGCAAAAGCCTATCAGCTCAAGGAT--GTAGCACCAG---- 322
BSNT_01607___ 329 TGGTGAAAACAC--TAAGACAAGTGCATG-GTGGCGAATAC---AAGCTT 372
.|||||.| ||.||| |||| .||.|| ||| |||.|.
BPUM_0887___y 323 ----AAAAACTCCTTACGAC-----CATGATTGACG--TACAAAAAGGTA 361
BSNT_01607___ 373 TCTA-CAGCTATT--ATGCCCCATGTGCTAACACATATGAAAAAT----- 414
.||| || ||| ||| || |||||.|..|||
BPUM_0887___y 362 CCTATCA---ATTAGATG------GT-------CATATCACCAATTTTCT 395
BSNT_01607___ 415 ----CAGCA------CGACCCGGAAAAAG---AAAAATACTA-TCAATTA 450
||||| .||.|| ||||| ||||||...| |.|||.|
BPUM_0887___y 396 TGTGCAGCATTTGACTGAGCC---AAAAGAGCAAAAATGGGAGTTAATGA 442
BSNT_01607___ 451 ACTAGA----------AGGGAAAAAGACGTTCTGACT-GAAATAGCGAAC 489
| ||| ||.||...|||.| |||.|.| |||||.||.||.
BPUM_0887___y 443 A--AGAGCTGACCAATAGAGAGCGAGATG-TCTTATTCGAAATTGCAAAG 489
BSNT_01607___ 490 GGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAAC 539
||||||||||||||||||||.||..||.|||||||||||||.|||||.||
BPUM_0887___y 490 GGGAAAAGCAATAAAGAAATTGCCTCATCCTTGTTTATTTCTGAAAAGAC 539
BSNT_01607___ 540 AGTAAAAACCCATGTATCGAATCTTTTAGCAAAACTTGAAGTGGCCGATC 589
.||.|||||.||.|||||..||.|.|||.||||.||.||..||||.||||
BPUM_0887___y 540 TGTCAAAACGCACGTATCTCATGTATTATCAAAGCTAGAGCTGGCAGATC 589
BSNT_01607___ 590 GCACGCAAGCAGCGCTTTTCGCAGTGAAATAT------AATCTGAATGGA 633
|.||.|||||.||.||||..||||||.|.||| |.||.|..|..|
BPUM_0887___y 590 GTACCCAAGCGGCTCTTTATGCAGTGGATTATCAAAAAAGTCAGCCTAAA 639
BSNT_01607___ 634 GAGAT-CTCAAAATGA 648
|||.| ||..||
BPUM_0887___y 640 GAGCTGCTATAA---- 651
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