Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01605 and BPUM_0886
See
Amino acid alignment /
Visit
BSNT_01605 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_01605___yhcY.1.24716.seq
# -bsequence dna-align/BPUM_0886___yhcY.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01605___yhcY-BPUM_0886___yhcY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01605___yhcY-BPUM_0886___yhcY.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01605___yhcY
# 2: BPUM_0886___yhcY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1327
# Identity: 744/1327 (56.1%)
# Similarity: 744/1327 (56.1%)
# Gaps: 350/1327 (26.4%)
# Score: 1943.0
#
#
#=======================================
BSNT_01605___ 1 ---------GTGAGCAAAATGAGGA----------------TGGAAAAAT 25
||.|.||.|||| ||| |.||||.||
BPUM_0886___y 1 ATGCCGGGGGTAAACAGAATG-GGAGAATATCAAGAGAAGGTTGAAACAT 49
BSNT_01605___ 26 TAAAAACGCTGAAAACGATTGCCGAAACCTTAAATCAAGGGCAC-GATAT 74
||||||||.|.|||...|||||.||||...|.|||.|| ||||| ||.||
BPUM_0886___y 50 TAAAAACGTTAAAAGAAATTGCTGAAAAGCTGAATGAA-GGCACGGAAAT 98
BSNT_01605___ 75 CAAAGCAACACTGGATGAGGTTTTAAAAGAGT--------TGCTGA---- 112
.||||..||.||..|||| ||| ||||||
BPUM_0886___y 99 GAAAGATACGCTTCATGA-----------AGTGCTCCATATGCTGATGGA 137
BSNT_01605___ 113 -GTCTGACAAACCTTCAATCCGGATGGATTTTTTTGATCGAAGAAGATGG 161
||| |||..|.||||.||||.||||||||.|||.||.|||.||||.||
BPUM_0886___y 138 TGTC--ACAGGCTTTCACTCCGCATGGATTTATTTTATAGAAAAAGACGG 185
BSNT_01605___ 162 GTCTTATACGTTAGC----GGCCGACG----CTTATCTGCCCCCGGCTTT 203
||..|||| |.| |||.||.| |||| ||||
BPUM_0886___y 186 --CTCGTACG--AACTGATGGCAGAGGTTTCCTTA-------CCGG---- 220
BSNT_01605___ 204 AAGC---CGCA----AGGAAAAAGTGCTGATGTGCGAAGGGGAGTGTTAC 246
|||| .||| |..||||||.|||.||||||.||...||.||.||.
BPUM_0886___y 221 AAGCGCTGGCAACTCATCAAAAAGAGCTCATGTGCCAAAACGATTGCTAT 270
BSNT_01605___ 247 TGCCTGA--CGAAATTCAATAACGGAGGGCTTAGAAAG------------ 282
|||.|.| |||.|..|| ||||
BPUM_0886___y 271 TGCATCAATCGATACACA----------------AAAGGTTCACTCCAAT 304
BSNT_01605___ 283 --GCTGCAAATATCATGAACTGCAAACGCATCGAATCAGC--------AG 322
||..||||.||.|||||.||.||||||||||||.|.|| ||
BPUM_0886___y 305 CAGCCACAAACATTATGAATTGTAAACGCATCGAAACGGCGATGAAAAAG 354
BSNT_01605___ 323 AAAACCTGCATTGTTTTGACACAGAAGGGATTACGCATCATGCAACTGTG 372
||| || |...||.||.|||||.||||||||||||||.||.||.
BPUM_0886___y 355 AAA--CT------TGGGGATACTGAAGGTATTACGCATCATGCGACAGTT 396
BSNT_01605___ 373 CCTTTAGAAG-----ACGGGGACAGAAGATTCGGATTGTTAAATGTGGCG 417
||..|..||| |.|.|.|| |||||||||.|||||||||||.
BPUM_0886___y 397 CCCCTCAAAGCATGTAAGCGTAC-----ATTCGGATTATTAAATGTGGCA 441
BSNT_01605___ 418 GCGGCCGGAAAAACCATGTTTGATG-AGGAAGAGCTGCATTTACTCGA-- 464
||....||||||..||..||| |.| |.|||||..||.|.||.||.||
BPUM_0886___y 442 GCAAAGGGAAAAGTCACATTT-ACGCAAGAAGAATTGAACTTGCTTGAAA 490
BSNT_01605___ 465 --ATCTGTCGCCTTTCAGATCGGAACGGCAATCCAGCGTATGAGGCTT-- 510
|| || ||| ||||.||.||.|||||.||.||.||.||||.||||
BPUM_0886___y 491 GCAT-TG-CGC--TTCAAATTGGTACGGCCATTCAACGGATGAAGCTTGT 536
BSNT_01605___ 511 ----TCCGAATATCAACAAAAAAATGCTCTTTT--AATGGAGCGTAACCG 554
..||||.|||||| |||||||||| || ||..|.|||||
BPUM_0886___y 537 GCAAAACGAACATCAAC------ATGCTCTTTTGGAA--GAAAGAAACCG 578
BSNT_01605___ 555 CCTCGCTCAGGAGCTT-CACGATTCAGTCAATCAAATGCTGTTTTCCGTC 603
.||.||.||||| ||| ||.|||||.|||||.||||||||.|||||.||.
BPUM_0886___y 579 GCTTGCACAGGA-CTTACATGATTCCGTCAACCAAATGCTATTTTCTGTT 627
BSNT_01605___ 604 AGTTTAACTGCCAAAGCTG-----CGAAGACACTAACAAAAGATGAGAAT 648
|||.|.|||||.||||||| |.|| |.||.||.|||.|||||
BPUM_0886___y 628 AGTCTGACTGCTAAAGCTGCTCGTCAAA-----TGACTAATGATCAGAAT 672
BSNT_01605___ 649 TTACAGCAGATGATTGAATTCATCCAAAACCTATCACAGGACGCGCTCGC 698
.||..|.|.||||||||.||.||.||..|..|.|||||.||.||..|.|.
BPUM_0886___y 673 CTAGGGGAAATGATTGATTTTATTCAGCATTTGTCACAAGATGCCTTGGT 722
BSNT_01605___ 699 AGAAATGAAAGCG----TTAATTTGGCAGCTTCGTCCCGGAGGATTGGAA 744
.||||| ||| .|.|||||||||||..|.||..|||||.|.|||
BPUM_0886___y 723 TGAAAT----GCGGTCACTCATTTGGCAGCTAAGACCAAGAGGACTTGAA 768
BSNT_01605___ 745 AAAGGGCTGGC----TGAAGCCATTAAAAGCTATGGTGCGCTCA------ 784
|||||..|..| .|||.|| ||.|| |||| ||
BPUM_0886___y 769 AAAGGATTCACAACAGGAATCC---AAGAG-TATG-------CAAAACTT 807
BSNT_01605___ 785 -TTGGAT-----TGAAGATCATTTTTA-CACAAAAAGGCTGTCCTGTTCT 827
|.|||| ||.|.||.||.|||| | |||||||
BPUM_0886___y 808 TTAGGATTACGCTGTACATTATCTTTATC------AGGCTGT-------- 843
BSNT_01605___ 828 GACTGAT-GAGCAGGAGCAT-------ATGCTATGGCGTGTCG-----TC 864
|| |||..|||.||| |||..|.|..||.||| .|
BPUM_0886___y 844 -----ATGGAGATGGATCATTCACAGCATGAAACGTTGTTTCGAGTATGC 888
BSNT_01605___ 865 CAGGAAGCTTTAAATAACTG-CAAAAAGCATGCCGGAACGGATACGGCGT 913
||||||||..|.|||||.|| |||||| |||| ||||| |.|.|.|..||
BPUM_0886___y 889 CAGGAAGCGCTGAATAATTGTCAAAAA-CATG-CGGAA-GTAGAGGAAGT 935
BSNT_01605___ 914 --ATGTTAGTCTGACTGCTT-----------------CTTTGTGCCATGC 944
|.||| |.|||| .|||
BPUM_0886___y 936 CAAAGTT-------CAGCTTGAACAATCAAAAGACACGTTT--------- 969
BSNT_01605___ 945 GGAGCTGGATATCATCGATCATGGGGCGGGATTTCGCTATGA--AGCGCA 992
||..||.|.||.||.||.||.||....||.||||..||||| |||..|
BPUM_0886___y 970 -GAAATGAAAATTATTGACCACGGAAAAGGGTTTCAGTATGACGAGCAAA 1018
BSNT_01605___ 993 TG--CCGGTCTGCCTTCACTTGGCATCAAGGGTATG-------------A 1027
|| | ||.|||||||||||..|.||.||.||| |
BPUM_0886___y 1019 TGAAC----CTCCCTTCACTTGGTCTGAAAGGGATGTCTGACCGCATCAA 1064
BSNT_01605___ 1028 AAGAACGGGCGGAAAAAGCCGGCGCTAAGTTTTGGATTGAGTCAGCGCTT 1077
||||.||||.|| ||..|||||.||.|||||.|..||.
BPUM_0886___y 1065 AAGAGCGGGTGG-------------TACATTTTGTATCGAGTCTGAACTC 1101
BSNT_01605___ 1078 GGAACTGGAACA------------AAGCTGTCCATCAGGCTTCCGCTAAC 1115
||.|..|||||| |||.|| |||| || |..|
BPUM_0886___y 1102 GGTAAAGGAACAACGATTCAAGTGAAGGTG-CCAT-----TT----TCTC 1141
BSNT_01605___ 1116 AAGCCGAAAAGGA--GGGGCGGTATGA 1140
||| |||||| |||.||..||||
BPUM_0886___y 1142 AAG----AAAGGAAGGGGTCGTCATGA 1164
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.