Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01589 and BPUM_0873
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:06
# Commandline: needle
# -asequence dna-align/BSNT_01589___yhcU.1.24716.seq
# -bsequence dna-align/BPUM_0873___yhcU.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01589___yhcU-BPUM_0873___yhcU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01589___yhcU-BPUM_0873___yhcU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01589___yhcU
# 2: BPUM_0873___yhcU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 468
# Identity: 205/468 (43.8%)
# Similarity: 205/468 (43.8%)
# Gaps: 189/468 (40.4%)
# Score: 386.5
#
#
#=======================================
BSNT_01589___ 1 ATGGCAAGAAAGGTGATTGACGTGAGAATTGTGAACGCAGC-----AACT 45
||||||.|..||||.||.|| |.||
BPUM_0873___y 1 ---------------------GTGAGATTAATGAAAGCTGCTACAGACCT 29
BSNT_01589___ 46 GC-AGAACAGG-------AGAGCTTTATC-AAGGAGCTGTCTATGGAGCT 86
|| |||.|||| ||| ..|||| ||||| ||| ||.|
BPUM_0873___y 30 GCAAGAGCAGGCAATTGAAGA--AATATCAAAGGA--TGT---TGAA--- 69
BSNT_01589___ 87 GATCCATGATGTATTTCCTCTTTATTTCTCCGA-------ACTGGAC--- 126
|||| ||.|||||| | |.|||||
BPUM_0873___y 70 GATC-----------------TTCTTTCTC--ATGCTGTCAATGGACAGG 100
BSNT_01589___ 127 ------ATTCAGCGCTTTAAAAAGAAAG-GCGTTCTGTCTTTAAATAACC 169
||.| |||| .|||||| .|| ||..||| |||
BPUM_0873___y 101 AGCGGGATAC-GCGC------CAGAAAGATCG--CTCGCTT------ACC 135
BSNT_01589___ 170 ATTAT----------TACCAAGGAACATTAAAAGAAGCATTTCAAATTAT 209
.|||| ||..|.|||||..|..|.||.||.||||..|||.|
BPUM_0873___y 136 TTTATTGATGGCGTATATAACGGAACGATGGATGATGCTTTTCGTATTTT 185
BSNT_01589___ 210 GGCTTGTCTGCAAATGATACAT---ATTATCCTG----ACC-AAGCCT-- 249
..|..|.||.||..|..||||| ||||| || ||| ||.|.|
BPUM_0873___y 186 ATCGGGACTTCAGCTATTACATACCATTAT--TGTAAAACCGAAACGTCA 233
BSNT_01589___ 250 --TCGCCGCACTCTGATTTGAGTGATCAGGCGATTTTTGAAAAAAAC--- 294
||.||..|| |.||||..|.|.|.||.||...||||
BPUM_0873___y 234 TCTCACCAAAC----------GAGATCGTGAGTTATTCGAGCGAAACCGT 273
BSNT_01589___ 295 -AGCAAGATGCTGAATGATTTTGGGATTTATTTTCCGTTTGCT------- 336
|||| |.|.||.|..|..||..|||.||||||.||||.|
BPUM_0873___y 274 GAGCA----GGTCAACGCCTGCGGCTTTTCTTTTCCTTTTGATCTAGACG 319
BSNT_01589___ 337 -TTTT-------CTGACTTTCAAAAGAAGACTAACAAAGCCTTTTTCGGT 378
|||| .|.||.|||||| |.|..|||
BPUM_0873___y 320 ATTTTGCTAGCCGTCACCTTCAAA--ATGCGTAA---------------- 351
BSNT_01589___ 379 CAAAGAAGGCTGATATAA 396
BPUM_0873___y 351 ------------------ 351
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