Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01587 and BPUM_0872

See Amino acid alignment / Visit BSNT_01587 in genome browser / Return to Orthologue table 
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:06
# Commandline: needle
#    -asequence dna-align/BSNT_01587___yhcT.1.24716.seq
#    -bsequence dna-align/BPUM_0872___rluA1.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01587___yhcT-BPUM_0872___rluA1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01587___yhcT-BPUM_0872___rluA1.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01587___yhcT
# 2: BPUM_0872___rluA1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1021
# Identity:     577/1021 (56.5%)
# Similarity:   577/1021 (56.5%)
# Gaps:         224/1021 (21.9%)
# Score: 1380.5
# 
#
#=======================================

BSNT_01587___      1 ATGAACCAAAAAGG-CAGAGGGCTTGAGATCCTCATCAATGAAAAACAGG     49
                     ||||....|||||| ||.|.|          ||| |||.|  ||||...|
BPUM_0872___r      1 ATGATTATAAAAGGACACACG----------CTC-TCACT--AAAAGTAG     37

BSNT_01587___     50 ACGGCCAAT------------------GGCTGTTTTCCGTACTCAAAACA     81
                     |||..||.|                  |.|..||||      |.||.|||
BPUM_0872___r     38 ACGAGCAGTATCATCACACTTCACTCAGTCATTTTT------TAAAGACA     81

BSNT_01587___     82 GC----GCTCAAAGCTTCTAAACCAGTGATACAAGACTGGATGTCCCATC    127
                     ||    .||    ||.||.|||||..|.||.||....||||||...||||
BPUM_0872___r     82 GCCGTATCT----GCATCAAAACCGATTATTCATTTTTGGATGGAGCATC    127

BSNT_01587___    128 AACAGAT------------AAAG---GTCAATCACGAATCCGTCTTAAA-    161
                     ||.||.|            ||||   |.|.||||||    ||.| |||| 
BPUM_0872___r    128 AAAAGGTTCGTTTAAATCAAAAGCCTGCCCATCACG----CGGC-TAAAG    172

BSNT_01587___    162 -CAATATGATTGTAAAAAAGGGAGACCGCGTGTTCATTGATCTT------    204
                      ||        ||.||    ||.||.|...|..|||||||| ||      
BPUM_0872___r    173 TCA--------GTCAA----GGCGATCAGATCATCATTGAT-TTATTTGA    209

BSNT_01587___    205 --CAG--GAAAGTGAAGCATCTTCGGTCATTCCGGAGTATGGCGAGCTTG    250
                       |||  ||||||||         .||.|..|||||.||.||.||..|.|
BPUM_0872___r    210 AACAGAAGAAAGTGA---------TGTGACACCGGAATACGGTGAATTAG    250

BSNT_01587___    251 ATATTTTATTTGAGGACAATCATATGCTCATCATCAAT-------AAACC    293
                     |..|..|.||.||.|||.|.|||       |.||.|||       |||||
BPUM_0872___r    251 AAGTACTCTTCGAAGACGAGCAT-------TTATTAATTGTACAAAAACC    293

BSNT_01587___    294 CGCTGGCATCG--CGACGCATCCGAATGAGGATGGGCAAACCGGCACACT    341
                     .||.||  .||  |.||.|||||||||||..|.||.|||||.||||||||
BPUM_0872___r    294 TGCCGG--ACGACCAACTCATCCGAATGAACAAGGACAAACTGGCACACT    341

BSNT_01587___    342 GGCTAAT-TTGATCGCGTATCATTATCAGATAAATGGCGAAACATGTAA-    389
                     |||.||| ||| |.||.|.|||||..||...||||||.|||    |.|| 
BPUM_0872___r    342 GGCAAATCTTG-TGGCATTTCATTTCCAAGCAAATGGAGAA----GAAAA    386

BSNT_01587___    390 ---GGTGCGCCACGTCCATCGTCTTGATCAGGATACATCTGGCGCTATCG    436
                        |||..|.||..||||..|.||.|||||.||.|||...||..|..||.
BPUM_0872___r    387 GCGGGTAAGACATATCCACAGGCTAGATCAAGACACAAGCGGAACCGTCA    436

BSNT_01587___    437 TTTTTGCCAAGCATCGTTTGGCACA--CGCCATCTTAGACCA---GCAGT    481
                     |||||||.||||||.|.||.||.||  ||.| |||| ||.||   ||..|
BPUM_0872___r    437 TTTTTGCAAAGCATAGATTAGCTCATGCGGC-TCTT-GATCAAATGCTTT    484

BSNT_01587___    482 -TAGAGAAAAAGACGCTGAAGCGTACGTATACCGCCATCGCTGAAGG---    527
                      |    |||||.||..|.||.||.||.||||.||||||.||.||.||   
BPUM_0872___r    485 CT----AAAAAAACAATTAAACGCACATATATCGCCATAGCAGAGGGACT    530

BSNT_01587___    528 ----TAAGCTACGGACGAAAAAAGGGACAATTAATTCACCGATCGGCAGA    573
                         .||       |.|||.|||||.||.||..||.||.|||||||..|.
BPUM_0872___r    531 TTTCAAA-------AAGAAGAAAGGCACCATCGATGCAGCGATCGGTCGT    573

BSNT_01587___    574 GACCGCTCACACC-CGACA---AGACGCCGGGTTTCACCAGGCGGGCAAA    619
                     ||   |..||||| || ||   |||||..|..||||.||....|||||||
BPUM_0872___r    574 GA---CAAACACCACG-CAGTGAGACGAAGAATTTCTCCTACAGGGCAAA    619

BSNT_01587___    620 CAGCCGTCACTCATTTCAAGGTAATGGCCAGCAATGCGAAAGAACGGCTG    669
                     .|||.||.||||||||..||||.||||      |.|.|||..||||.|||
BPUM_0872___r    620 AAGCTGTGACTCATTTTCAGGTCATGG------ACGTGAATAAACGTCTG    663

BSNT_01587___    670 TCGCT------CGTTGAATTAGAGCTGGAAACAGGCAGAACACACCAAAT    713
                     ...||      .|||.||.||.|.||.||.||.||.|||||.||.|||||
BPUM_0872___r    664 CAACTAACAGCGGTTAAACTACAACTAGAGACGGGTAGAACGCATCAAAT    713

BSNT_01587___    714 CCGTGTTCATC-TGGCGAGCCTCGGCCATCCGTTGACAGGAGACTCGCT-    761
                     .|||||.||.| |.|| ||.|||||.||.||..|..|.|||||..||.| 
BPUM_0872___r    714 TCGTGTCCACCTTAGC-AGTCTCGGGCACCCACTAGCTGGAGATACGTTA    762

BSNT_01587___    762 --TTACGGAG-GCGGGA--GCAAGCTGCTAAACAGGCAGGCACTGCACGC    806
                       |.|||||| .||.||  .||      |.||||||...||.||.|||||
BPUM_0872___r    763 TATGACGGAGTTCGTGAATACA------TCAACAGGTGTGCTCTTCACGC    806

BSNT_01587___    807 CAATAAAGT--ACAAGCGGTT----CACCCGATAACAGACGAGC------    844
                     |||..||||  |||      |    ||.||..|.||||..||||      
BPUM_0872___r    807 CAAGCAAGTTGACA------TGAAACATCCTTTTACAGGTGAGCATCTGA    850

BSNT_01587___    845 TCATAGTTGCTGAAGCCCCTTTCCCTGCTGATATGAAAAACCTTTGCCGC    894
                     |||||      |||||.|||||.||..||||||||.|..|.||      |
BPUM_0872___r    851 TCATA------GAAGCTCCTTTACCACCTGATATGGACCAACT------C    888

BSNT_01587___    895 A-----CATATTTTTCATGA-    909
                     |     ||.||..|.|||.| 
BPUM_0872___r    889 ATGAGTCAAATCATCCATTAA    909


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