Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01543 and BPUM_0863
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:04
# Commandline: needle
# -asequence dna-align/BSNT_01543___yhcK.1.24716.seq
# -bsequence dna-align/BPUM_0863___yhcK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01543___yhcK-BPUM_0863___yhcK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01543___yhcK-BPUM_0863___yhcK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01543___yhcK
# 2: BPUM_0863___yhcK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1246
# Identity: 678/1246 (54.4%)
# Similarity: 678/1246 (54.4%)
# Gaps: 326/1246 (26.2%)
# Score: 1632.0
#
#
#=======================================
BSNT_01543___ 1 TTGCTGAAAGAACTGTTTGTAAATTTCACCATTTTAATCACATTTAATTA 50
|||||.|.|||.||.|||.|.|||||.||.|||.|..||||.||..||||
BPUM_0863___y 1 TTGCTAAGAGACCTCTTTATTAATTTAACAATTCTTGTCACTTTCCATTA 50
BSNT_01543___ 51 TCTCTTCACCCACCTGTTTAAAGAAAGGCTAGTACATAAAAAAGACAGCA 100
|.|.||.|..|...||||||||||.|...|..||.|.|||.||||.|.|
BPUM_0863___y 51 TTTATTTATGCTTGTGTTTAAAGAGAATTTTCTAAAGAAAGAAGATACC- 99
BSNT_01543___ 101 TATCTTTTCA---AGCTGT-TAAAGGACTGGCCTGC-----GGTTTGCTC 141
||..||| |.||.| .||| |||.|.| ||.||.|||
BPUM_0863___y 100 ---CTGCTCAGACAACTATGCAAA-----GGCATTCTTTCTGGGTTACTC 141
BSNT_01543___ 142 GGGGTTATTCTGATGGTTTT------------TGGATTTACCTATCAGC- 178
||.||..|..|.|||.|.|| |||| ..|.||||||.|
BPUM_0863___y 142 GGTGTCCTCTTAATGTTCTTCTCTATCAAAGCTGGA-CCAGCTATCATCG 190
BSNT_01543___ 179 ATTCAATTATTGATCTTCGAAATATCCCTATTATGATTGCCGCTCTTTAT 228
|||.|| ||.|||||||..||||..|..|.||..||||.
BPUM_0863___y 191 ATTTAA------------GACATATCCCCCTTATTTTAACGGCCTTTTAC 228
BSNT_01543___ 229 GGAGGCTGGGTTTCAACGGCAACGGCCCTGGCCATGATCACTGCAGGCCG 278
|||||| |..||||...||||.|| |||| ||||
BPUM_0863___y 229 GGAGGC---------------ATTGCCCAAACCATTAT---TGCA-GCCG 259
BSNT_01543___ 279 CTTGCTGATTACGATGAACACATCTGCACTATACTCGGTTATTATCATTT 328
|||.|| |||.|| .|..|||.||||||
BPUM_0863___y 260 -TTGTTG-------TGATCA----------TTGGTCGATTATTA------ 285
BSNT_01543___ 329 GTATCGCTGCCA----------TTCCGTCACTCATTGTTTCTA-GAAGAA 367
||||..|||| ||.|.|||.| |||.||||.| ||.||
BPUM_0863___y 286 --ATCGAAGCCAACATCGCTTCTTTCATCAAT-ATTTTTTCCATGATGA- 331
BSNT_01543___ 368 AAAAAGTTCA--ACTAAAACATGCTTTCTATCTTTTAAT----------- 404
||| .|||.| ||| |.|.|||||||
BPUM_0863___y 332 -------TCATTGCTACA----GCT---TCTTTTTTAATTGCTGAACGAC 367
BSNT_01543___ 405 -----CATCA-------CAAATAGCTTGATCTCCTTTTCCTTT------- 435
.|||| .|||| |||| ||.|||.||
BPUM_0863___y 368 ATATGAATCATGTTGTGAAAAT-GCTT-------TTGTCCATTACGATCG 409
BSNT_01543___ 436 -TA-------------------TTTTCTTATAGAT-TTACAT------TC 458
|| .|||.|.|| ||| .|.||| ||
BPUM_0863___y 410 GTAATGTGATTGCCACAAGCCTGTTTATCAT-GATCGTGCATGAGACATC 458
BSNT_01543___ 459 ATACGAACTTCATTTGTA-TTTTTGGA-----TCATATCAATAGCGGGCG 502
||..|||||.||||| || ||.||||| |||||| ||.||
BPUM_0863___y 459 ATTTGAACTGCATTT-TACTTATTGGATGTTCTCATAT--ATTGC----- 500
BSNT_01543___ 503 GCATGCTCAGTTTA-----TATATTATTGATCATGAAACAAATGCACATC 547
.|.|..||||| ||..|.|||||.|||.|||||||.|||.|||
BPUM_0863___y 501 ---AGTTTTGTTTAACTTTTACGTCATTGAACATCAAACAAAAGCATATC 547
BSNT_01543___ 548 TTCTTTTTAAACAATATAAGTTTCAGGCGCACTTTGACTTTTTAACAGGC 597
..||.||.||....|||||.||.||.||.||.|.|||||||||||||||.
BPUM_0863___y 548 AGCTGTTGAATTTGTATAAATTCCAAGCTCATTATGACTTTTTAACAGGT 597
BSNT_01543___ 598 GTGT---AT-AACCGAAGAAAATTTGAAG-------AAA----------- 625
||.| || |||.|||| ||.||.| |||
BPUM_0863___y 598 GTTTTAAATAAACGGAAG----TTCGATGAGGTCTTAAATGATGCTTTTT 643
BSNT_01543___ 626 CCACGAAAGCTCTGTATCAGCAGGCGGCCGATACCCCGCATTTTCAATTT 675
|.|.|||| |.|.|||| |..||||| .||||.|.
BPUM_0863___y 644 CGATGAAA------TTTAAGCA------CCCTACCC------ATCAAATG 675
BSNT_01543___ 676 GCACTGATTTATATGGATATCGATCATTTTAAGACCATCAATGACCAATA 725
.|.||.|||||..|.||.||||||.|.||.||..||||||||||||||||
BPUM_0863___y 676 TCCCTTATTTACTTAGACATCGATTACTTCAAATCCATCAATGACCAATA 725
BSNT_01543___ 726 TGGCCATCATGAAGGAGATCAGGTGCTCAAAGAGCTGGGGTTACGTCTGA 775
|||.||||||||.||||||..|||..|.|||||..|.||...|.|.|||
BPUM_0863___y 726 TGGACATCATGAGGGAGATATGGTTTTAAAAGAAATCGGAAAAAGGCTG- 774
BSNT_01543___ 776 AGCAGAGCATCCGAAATAC-AGATCCTGCCGCTC--------------GG 810
|||..|||.|| ||| .|||| ||
BPUM_0863___y 775 --------ATCAAAAACACAAGA------AGCTCTGATTATATTGGCAGG 810
BSNT_01543___ 811 ATCGGCGGTGAAGAATTTGCCGTTCTCCTGCCGAACTGTTCTCTTGATAA 860
|||||.||.||.||||||||.||..|.||.||.||.|||.|..||||.||
BPUM_0863___y 811 ATCGGTGGCGAGGAATTTGCTGTCTTTCTACCAAATTGTACAGTTGAAAA 860
BSNT_01543___ 861 A-----GCAGCCCGAATCGCTGAACGGATCAGGAGAACTGTAAGT----G 901
| |||| ||.||.|||||..|..|||||| ||.| |
BPUM_0863___y 861 AACATGGCAG-----ATTGCAGAACGTTTACGGAGAA----AAATAGCAG 901
BSNT_01543___ 902 ATGCA-CCGATTGTATTAACAAACGGTGAAGAGCTTTCA-GTTACGATAT 949
|| || |||.|| ||||.|||||..|..|.|..|.|||| .||||..|||
BPUM_0863___y 902 AT-CAGCCGGTT-TATTTACAAAATGGCATGTCCATTCATATTACAGTAT 949
BSNT_01543___ 950 CACTAGGGGCCGCTCATTACCCCAATAATACGGAACA--GCCAG-GATC- 995
||||.|||...||..||||| |..||.||| .|||| .|||
BPUM_0863___y 950 CACTTGGGTGTGCGTATTAC--------TCTGGGACAAGTCCAGACATCA 991
BSNT_01543___ 996 ----CTTGCCCATTCTTGCCGATCAAATGCTTTACAAAGCGAAAGAAACG 1041
.||.||.|||.|.||.|||||...|||.||.||||||||..|..|.
BPUM_0863___y 992 AACAATTACCGATTATAGCTGATCAGGAGCTCTATAAAGCGAAGCAGTCT 1041
BSNT_01543___ 1042 GGACGGAA-CAGAGTGTGTTTTTC----AGAAAAAAAAG--AATGA 1080
||.||.|| || ||||.|.||.|| |||||||.|.| |||||
BPUM_0863___y 1042 GGTCGAAATCA-AGTGAGCTTCTCAGGGAGAAAAAGAGGCCAATGA 1086
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