Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01528 and BPUM_0858
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:04
# Commandline: needle
# -asequence dna-align/BSNT_01528___yhbJ.1.24716.seq
# -bsequence dna-align/BPUM_0858___yhbJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01528___yhbJ-BPUM_0858___yhbJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01528___yhbJ-BPUM_0858___yhbJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01528___yhbJ
# 2: BPUM_0858___yhbJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 682
# Identity: 471/682 (69.1%)
# Similarity: 471/682 (69.1%)
# Gaps: 65/682 ( 9.5%)
# Score: 1679.0
#
#
#=======================================
BSNT_01528___ 1 ATGATAGAGGATGAAACGAAAGGAGAAAACAAAATGAACAGAGGACGTTT 50
|||||||||||.|||||
BPUM_0858___y 1 ---------------------------------ATGAACAGAGGGCGTTT 17
BSNT_01528___ 51 AATTCTGACCAACATTATCGGTTTGATTGTTGTTCTTGCAATTATAGCTG 100
|.|.||.||.||||||||.||..|.|||||..|||||||.|||||.||.|
BPUM_0858___y 18 ATTGCTAACGAACATTATTGGCCTTATTGTGATTCTTGCCATTATTGCCG 67
BSNT_01528___ 101 GAGGTGCTTACTACTATTATCAAAGCACAAACTACGTAAAAACAGATGAA 150
||||||||||.||||||||..||||||||||.|..||.|||||.||.||.
BPUM_0858___y 68 GAGGTGCTTATTACTATTACGAAAGCACAAATTTTGTCAAAACTGACGAG 117
BSNT_01528___ 151 GCAAAAGTAGCGGGCGATATGGCTGCTATTACTGCTCCAGCAGCAGGTAA 200
|||||||||.|.||.||.|||..|...||.||.||.||||||||.||..|
BPUM_0858___y 118 GCAAAAGTAACAGGTGACATGTATCAAATCACAGCACCAGCAGCTGGACA 167
BSNT_01528___ 201 AGTATC--TGACTGGGATCTGGATGAAGGAAAAACAGTGAAAAAAGGCGA 248
| ||| .|.|||||||.|..|||||||..|...||||.||||||.|..
BPUM_0858___y 168 A--ATCAAAGGCTGGGATATCAATGAAGGTGACGAAGTGCAAAAAGACAG 215
BSNT_01528___ 249 CACAGTTGCAAAAATCAAAGGCG-AACAAACTGTTGACGTAAAATCCATT 297
|||||||||||||.|..||||.| |||||| ||.|..||||
BPUM_0858___y 216 CACAGTTGCAAAAGTTGAAGGAGAAACAAA----------AACAAACATT 255
BSNT_01528___ 298 A------TG---GATGGAACAATTGTGAAAAACGAAGTGAAAAACGGACA 338
| || |||||.|||.|.||.|||||.|||||..|||||...||
BPUM_0858___y 256 AAATCAGTGGCTGATGGCACATTAGTCAAAAAAGAAGTACAAAACAATCA 305
BSNT_01528___ 339 AACCGTACAAGCTGGTACAACAATTGCACAAACGATTGACATGGACAACC 388
|...||.||..||||||||....|||...||||.|||||..|...|||.|
BPUM_0858___y 306 ACAAGTGCAGCCTGGTACAGTTCTTGGTGAAACCATTGATTTAAGCAAGC 355
BSNT_01528___ 389 TATACATCACAGCAAATATTAAAGAAACAGATATTGCGGATATTGAAGTA 438
|||||||||||||.|||||.|||||||||||||||....|.||||||..|
BPUM_0858___y 356 TATACATCACAGCGAATATCAAAGAAACAGATATTAAAAACATTGAAAAA 405
BSNT_01528___ 439 GG----AAATAGTGTAGACGTTGTAGTTGACGGAGACCCTGATACAACAT 484
|| ||| ||.|||.|.||.||.||.||.||.|||..||||||||
BPUM_0858___y 406 GGCGACAAA----GTCGACATCGTGGTAGATGGTGATCCTAGTACAACAT 451
BSNT_01528___ 485 TTGACGGTACTGTGGAAGAAATTGGCTATGCGACTAACTCAACTTTTGAT 534
||||.||.||.||.|||.|||||||.||||||||.||||||||.||..|.
BPUM_0858___y 452 TTGAAGGAACAGTTGAACAAATTGGTTATGCGACAAACTCAACATTCAAC 501
BSNT_01528___ 535 ATGCTTCCTTCTACAAATTCAAGCGGAAACTACACAAAAGTAACACAAAA 584
|||||.||..|.|||||.|||||.||.|||||.||||||||.||||||||
BPUM_0858___y 502 ATGCTACCAGCAACAAACTCAAGTGGTAACTATACAAAAGTGACACAAAA 551
BSNT_01528___ 585 AATTCCTGTGAAAATTTCAATCAAAAACCCATCTGATAAGGTGCTTCCTG 634
|.|..|.||||||||||||||.|||||.|||||.||.||.||.|||||||
BPUM_0858___y 552 AGTAGCAGTGAAAATTTCAATTAAAAATCCATCAGACAAAGTACTTCCTG 601
BSNT_01528___ 635 GAATGAATGCATCTGTTAAAATTTCTGAGTAA 666
|.||||||||.|||||.||||||||....|||
BPUM_0858___y 602 GTATGAATGCTTCTGTCAAAATTTCATCTTAA 633
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