Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01513 and BPUM_0846
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:03
# Commandline: needle
# -asequence dna-align/BSNT_01513___yhzB.1.24716.seq
# -bsequence dna-align/BPUM_0846___yhzB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01513___yhzB-BPUM_0846___yhzB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01513___yhzB-BPUM_0846___yhzB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01513___yhzB
# 2: BPUM_0846___yhzB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 715
# Identity: 391/715 (54.7%)
# Similarity: 391/715 (54.7%)
# Gaps: 209/715 (29.2%)
# Score: 988.0
#
#
#=======================================
BSNT_01513___ 1 GTGAATAT-CAAACTTGA---TTCTGTTATTACTG--AACGTGCGGCCGG 44
|||||.|| ||.| |.|| ||| |..|.||| ||| |||.
BPUM_0846___y 1 GTGAAGATACATA-TGGAAATTTC---TCATCCTGAAAAC------CCGT 40
BSNT_01513___ 45 CTTACATGCAGCTGCTG---TCATT---TATGAGAATATCGAAGTCGGCT 88
|| ||.|| ||.|| ..||| |||....||||.|||||.|||.
BPUM_0846___y 41 CT---ATCCA--TGTTGGAAAGATTGAATATTCTCATATTGAAGTTGGCA 85
BSNT_01513___ 89 CCTCACCGCAAATGCTGAAAGGCAGACTCCGCCTGTTTCAAGAATCCTTG 138
|.||.||.||||||.|.||||||.|..|.|||||||||||||||||.||.
BPUM_0846___y 86 CATCCCCTCAAATGTTAAAAGGCCGGTTACGCCTGTTTCAAGAATCTTTA 135
BSNT_01513___ 139 TTTTTCGACTATGCGGACGGCGGTATATCCGATGAATCCTTCG------- 181
||.||.|| ||.||.| |||.||..|||.|
BPUM_0846___y 136 TTCTTTGA--ATACGAA-------------GATAAAGTCTTAGAGGAAGT 170
BSNT_01513___ 182 --------TCAAGGAATGGCAGGAACTCTTTAAACAGCTTAACCCTTCAT 223
||||.||||||..|||.||.||.|||.| |.|||.|
BPUM_0846___y 171 ACCAGCAATCAAAGAATGGACGGACCTTTTAAAAGA-------CGTTCCT 213
BSNT_01513___ 224 TTGAGGGAGAAACAACC--CCAATGGAGGACATGCTGGTCCCGATATCC- 270
|| || ||||| |..|.|.|||||||
BPUM_0846___y 214 TT-------------CCTGCCAAT-----------TCTTGCGGATATCCA 239
BSNT_01513___ 271 -AAGGAACAATTCATGGAAAGTATAGACTCGGCCCATGAC--ACA----- 312
||||||||||| |||.||||||.||.||..| |||
BPUM_0846___y 240 AAAGGAACAATT---------TATTGACTCGACCAATTCCGTACAGGATT 280
BSNT_01513___ 313 -ATCGAT-TTTTTCGCATTAAAATATTCTC-TGCCTATTATGATTTATGA 359
.||||| ||||||.|.|||||||||| || |||||||..|||..|..||
BPUM_0846___y 281 TGTCGATCTTTTTCTCTTTAAAATATT-TCTTGCCTATCCTGACCTTCGA 329
BSNT_01513___ 360 TGCCG--------GAA-AGC----TT-----------CATGAG-CCGGTC 384
|||.| ||| ||| || |||||| |.||
BPUM_0846___y 330 TGCTGATCGCCTAGAAGAGCCACTTTCACTAGCAAAACATGAGACTGG-- 377
BSNT_01513___ 385 CGGATCTCATTG---GG--AGAAAAAGAAAACATACTGCTTTTCTCTGAT 429
||.||||| || |||.|||| .|..||||
BPUM_0846___y 378 ----TCACATTGAATGGCAAGACAAAG------CAGGGCTT--------- 408
BSNT_01513___ 430 GAAAACGGCATTTTTGGCGATTTCAAAAACAACGTCAACCACTATCCCGT 479
||| |.|||.| ||||..||.||| ||.||.| ||.|.|
BPUM_0846___y 409 --AAA--GGATTAT------TTTCTCAACCAA-GTAAAGC----TCACAT 443
BSNT_01513___ 480 TTCAAACGAGACTAAGAATATGCTGCAAATCATTTTTTTCCCGCCATCGA 529
|||..|.|..||.||.||.||.|||||||||||..|.||.||||||||.|
BPUM_0846___y 444 TTCTCAAGGCACAAAAAACATTCTGCAAATCATCCTGTTTCCGCCATCTA 493
BSNT_01513___ 530 TT----GAGAAAAGCAGCGCTGTTAACCTCTTAT--CATCATTAACGAAA 573
|| |.|||||| .||.||.||||.|| .|||.||.|||||.
BPUM_0846___y 494 TTTCCCGGGAAAAG------AGTGAAGCTCTCATTCAATCCTTGACGAAG 537
BSNT_01513___ 574 ATGTTTGAACAAATTCACGGCGGCACCTATACAGTACATTGG--CTTACG 621
|||||||.||||||.||.||.|| |.|.||||.||..| ||||..
BPUM_0846___y 538 ATGTTTGTACAAATACATGGTGG-----AGAAAGTAAATATGAACTTATT 582
BSNT_01513___ 622 TAA------------ 624
.||
BPUM_0846___y 583 GAAAAAGCACTGTAG 597
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