Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01515 and BPUM_0844
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:03
# Commandline: needle
# -asequence dna-align/BSNT_01515___yhbB.1.24716.seq
# -bsequence dna-align/BPUM_0844___yhbB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01515___yhbB-BPUM_0844___yhbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01515___yhbB-BPUM_0844___yhbB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01515___yhbB
# 2: BPUM_0844___yhbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 993
# Identity: 617/993 (62.1%)
# Similarity: 617/993 (62.1%)
# Gaps: 165/993 (16.6%)
# Score: 1712.5
#
#
#=======================================
BSNT_01515___ 1 TTGAAGCACATT-TTAGAACAA---TTAGCGGAGGAGCGGCTGGGCTTTC 46
.||||.|| ||| |||||..|| ||| ||.||..||||||..|.|.
BPUM_0844___y 1 GTGAAACA-ATTATTAGAGAAAACTTTA---GAAGACAGGCTGGCGTATT 46
BSNT_01515___ 47 TGGTTAACGGGCATGCTATGAGACA---GGAGTCTCAAGTC------GGA 87
|..|.||.|..|.|||.||.|.||| ..|| ||||.||| |||
BPUM_0844___y 47 TAATCAATGACCGTGCAATCAAACAACCACAG-CTCATGTCTGATGTGGA 95
BSNT_01515___ 88 GACCTTAAAGTCATGGAGCGTAAGAAAAAGCTT----CTGGAAAAACGTA 133
..| |||| ||.||.||.|||.|.||| ||.||| |..
BPUM_0844___y 96 AGC-----AGTC---GAACGGAAAAAAGAACTTTTTGCTAGAA----GAC 133
BSNT_01515___ 134 AAGTTGACATCATAAAAGCGAAAGCAAAGG-------CCGTGATTAATCA 176
|.||.||.||..|.|||||||||||.||.| ||..||||..||
BPUM_0844___y 134 AGGTGGAGATTGTCAAAGCGAAAGCCAAAGCAACACTCCTCGATTCTTC- 182
BSNT_01515___ 177 TGTGCGGGTTGAGGATGACGGAACGAC-CTGCCTTT--CGTATACCATTC 223
|.||.|||||||||| |.| |.||.|.| .||||..|..||
BPUM_0844___y 183 ------GATTCAGGATGACGG---GGCTCAGCATGTGCAGTATCTCGCTC 223
BSNT_01515___ 224 A--TTACGAATACGTGTGTAAGGAACAAGATGACAGC-TTGTATATAGAA 270
| |||| .||.||.||.|||||...|||.|| |.| ||.|||.||||.
BPUM_0844___y 224 ATCTTAC--TTATGTATGCAAGGATGTAGACGA-ATCTTTTTATTTAGAG 270
BSNT_01515___ 271 GAGCACATAG--AGGAGCGAATGGCTTTCCTGTATGATCACA---TTTTG 315
|||||..||| |..||.||| ||.|||||.||..|..||| ||.||
BPUM_0844___y 271 GAGCAGGTAGAAAAAAGAGAA--GCGTTCCTTTACAACGACATGCTTGTG 318
BSNT_01515___ 316 A--------TTAGTGATCAGGAAATTGCGAAAAAGCCGGCTGGATTTCAT 357
| ||..|||| ||.|||..||.||| |||| ..||
BPUM_0844___y 319 AAAGACCGGTTGATGAT-AGAAAAGCGCCAAA--------TGGA--AGAT 357
BSNT_01515___ 358 GAAG-GGACCAGTATTATTGACTATTCTGAAGCTGAAGAGGAAAGAGAAG 406
.||| ||| |||...||.|.||.|.|| ||||.
BPUM_0844___y 358 CAAGTGGA----------TGAGCGTTTTCAAACCGA---------AGAAC 388
BSNT_01515___ 407 CGTTTGGCAGGGCTTTTCAATACGATCGTCTCGGC-GCTGTCCAATATGC 455
.||||||.||.||.|||||.||.||.||.| .||| |||||.||||||||
BPUM_0844___y 389 AGTTTGGGAGAGCCTTTCACTATGACCGAC-GGGCAGCTGTGCAATATGC 437
BSNT_01515___ 456 CGAGAAATTTTGGAACAAGCGCAATCCTGCTTATAAAAATTTCAGCGATA 505
.||||..|..|||||.||.||.||||||||.|||||||||||....||||
BPUM_0844___y 438 GGAGACGTACTGGAATAAACGAAATCCTGCCTATAAAAATTTTGAAGATA 487
BSNT_01515___ 506 ACTGTACAAATTTTATTTCTCAGTGTCTT-CATGCAGGAGGCGCGCCGAT 554
||||.||||||||||||||.||.|| ||| .|.||.|||...|||||.|.
BPUM_0844___y 488 ACTGCACAAATTTTATTTCACAATG-CTTGAAGGCTGGAAATGCGCCAAC 536
BSNT_01515___ 555 GCGCGGTCATCCGAACAGGGGATCAGGCTGGTGGAT---GAAACAAAGCT 601
|.|.||..||||||||.|.|||||.|||||||||.| |...||.|
BPUM_0844___y 537 GAGAGGGTATCCGAACCGCGGATCTGGCTGGTGGGTACGGCCGCATA--- 583
BSNT_01515___ 602 CATGGAGCTACAGCTGGACGGTGGCGCACTCTATGAAAATGTATTTGTCG 651
|.||||||||.||||||||.||.||.||.||.|||||||..|||||..|.
BPUM_0844___y 584 CGTGGAGCTATAGCTGGACAGTAGCTCATTCGATGAAAAATTATTTAGCA 633
BSNT_01515___ 652 AATTC-AAAGGCCGGACTGCGTGCGGTGCGGGT-----------GAAA-T 688
||||| ||| |||||| |||| |
BPUM_0844___y 634 AATTCGAAA------------------GCGGGTTTAAGAGCACAGAAACT 665
BSNT_01515___ 689 CA-----GCGGAAGAACT---GATGCCGGGCGATGTGATTTGCTATGACT 730
|| ||..|.||||| .|| .||.|||||.||||||||.||.|
BPUM_0844___y 666 CAAAGATGCACAGGAACTTCAAAT---TGGTGATGTCATTTGCTACGATT 712
BSNT_01515___ 731 TCGAAGGAGACGGCCGCTTTAATCATACAACGATTGTCGTGGCAAAGGAC 780
|.||.|||||.|||.|.|.||||||||||||.|||||.||.|...|.||.
BPUM_0844___y 713 TTGAGGGAGATGGCAGGTATAATCATACAACCATTGTTGTCGATCACGAT 762
BSNT_01515___ 781 AAAGGCAATATGCCGCTTGTCAACGCCCAGACCTATGACAGCCGGATGAG 830
|||||....|||||.|||||.||.||.|||||.||||||||.||.|||.|
BPUM_0844___y 763 AAAGGTGGAATGCCTCTTGTGAATGCTCAGACATATGACAGTCGAATGCG 812
BSNT_01515___ 831 GTATTGGTCATATGAGGATTCTACAGC--ATACACGCAGTCAATACGATA 878
.||||||||.|||||||||||.||.|| |||||| ||| |.||.|||||
BPUM_0844___y 813 TTATTGGTCGTATGAGGATTCAACCGCCTATACAC-CAG-CTATTCGATA 860
BSNT_01515___ 879 TGCCTTTTTTCATATCGTTGATGATACGACAAA--AGAGTAA- 918
|...||||||||.||..|.||.|||.|..|.|| |.|||.|
BPUM_0844___y 861 TATGTTTTTTCACATTTTGGACGATGCCGCGAAGGATAGTTAA 903
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