Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03467 and BPUM_0840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence dna-align/BSNT_03467___sipS.1.24716.seq
# -bsequence dna-align/BPUM_0840___sipP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03467___sipS-BPUM_0840___sipP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03467___sipS-BPUM_0840___sipP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03467___sipS
# 2: BPUM_0840___sipP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 706
# Identity: 373/706 (52.8%)
# Similarity: 373/706 (52.8%)
# Gaps: 182/706 (25.8%)
# Score: 1039.0
#
#
#=======================================
BSNT_03467___ 0 -------------------------------------------------- 0
BPUM_0840___s 1 TTGATTTGTTGGCAAAATATGTTTATATTTATGGTGATACAATACAAGAG 50
BSNT_03467___ 0 -------------------------------------------------- 0
BPUM_0840___s 51 TAAATGCTGGCGTAAAGCTGGCAGAAACTCATTTCGTCCTAGGGGATTTC 100
BSNT_03467___ 1 -----------TTGAAATCAGAAAATGTTTCGAAGAAAAAATCAATATTA 39
.||| ||..|||| |.|||||..|||.|..|
BPUM_0840___s 101 AGGAGGAGCTTATGA---CAACAAAT-------ACAAAAACACAAAAAAA 140
BSNT_03467___ 40 GAA----------------TGGGTTAAAGCAATTGTGATTGCTGTCGTTC 73
||| |||.|||||||.|||.|.||.||..||.|..
BPUM_0840___s 141 GAAGTCAGAAGTATGGGGCTGGCTTAAAGCGATTTTAATCGCATTCATCG 190
BSNT_03467___ 74 TTGCTTTGCTCATCCGCAACTTTATTTTTGCGCCGTATGTCGTTGACGGT 123
.||.|||..||||.||.||||||.|.||.||.|||||..|.||..|.|
BPUM_0840___s 191 CTGTTTTTATCATTCGTAACTTTTTATTCGCACCGTACATTGTAAAAG-- 238
BSNT_03467___ 124 GAA--TCCATGGAACCTACACTTCACGATCGTGAAAGGGTCTTTGTCAAT 171
||| ||.||||||||.|||.|.||..||...|||.||||.|||||.|||
BPUM_0840___s 239 GAACCTCTATGGAACCAACATTGCATAATACAGAACGGGTTTTTGTGAAT 288
BSNT_03467___ 172 ATGACAGTCAAATACATCGGCGAGTTTGATAGAGGAGA---CATTG-TCG 217
|..||.||..|.|||.||||.||.|.|.|..|.|||.| ||||| ||.
BPUM_0840___s 289 AAAACGGTTGATTACTTCGGTGATTATAAGCGGGGACAGATCATTGTTCT 338
BSNT_03467___ 218 TGTTAAACGGAGATGA------TGTTCACTATGTCAAACGTATT-ATCGG 260
|| |.||.||.|| ...|||.|||||.||||| ||| ||.||
BPUM_0840___s 339 TG----ATGGGGAAGACCGCAGCACTCATTATGTTAAACG-ATTAATTGG 383
BSNT_03467___ 261 CCTTCCCGGCGATACGGTTGAGATGAAAAATGACCAGCTCTATATCAACG 310
..|.||.||.||||...||||.||||||||||||||.||.|||.||||.|
BPUM_0840___s 384 TTTACCTGGTGATAAAATTGAAATGAAAAATGACCAACTGTATGTCAATG 433
BSNT_03467___ 311 GGAAAAAGGTGGACGAACCTTATTTGGCGGCTAATAAAAAGAGAGCGAAA 360
|..||||.||.|..||.|||||.||.|||.|.||.|||||||.||| |.
BPUM_0840___s 434 GTCAAAAAGTAGCTGAGCCTTACTTAGCGTCAAACAAAAAGAAAGC--AG 481
BSNT_03467___ 361 CAG--GACGGTAAACCT--TTGACCGATGATTTCGGCCCGGTTAAAGTGC 406
||| ||.|| .|.|| |||||...||||||.||.||..|||..||.|
BPUM_0840___s 482 CAGCAGATGG--CATCTTGTTGACACCTGATTTTGGTCCTCTTACTGTAC 529
BSNT_03467___ 407 CTGATAA--CAAGTATTTTGTGATGGGTGACAATCGTCGGAATTCCATGG 454
| |.|| .|||||||||||.||||||||||||||||..|||||.||||
BPUM_0840___s 530 C--AAAAGGAAAGTATTTTGTCATGGGTGACAATCGTCAAAATTCAATGG 577
BSNT_03467___ 455 ACAGCCGTAACGGACTT-GGCCTCTTCACGAAAAAACAAATTGCGGGTAC 503
||||.||.||.|| ||| ||.||.||.||.||.|...|.|||...||.||
BPUM_0840___s 578 ACAGTCGCAATGG-CTTAGGTCTTTTTACAAAGAGTGATATTCAAGGAAC 626
BSNT_03467___ 504 GTCAAAGTTTGTTTTCTACCCGTTTAACGAAATGCGCAAAACAAATTAG- 552
|.||...|||||.||.||.||.||..|.||..|.|| ||.|.|||.
BPUM_0840___s 627 GACATCATTTGTGTTTTATCCTTTCCAAGACGTTCG----ACTACTTAAC 672
BSNT_03467___ 552 ------ 552
BPUM_0840___s 673 GATTAA 678
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