Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01449 and BPUM_0829
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:02
# Commandline: needle
# -asequence dna-align/BSNT_01449___ygxA.1.24716.seq
# -bsequence dna-align/BPUM_0829___ygxA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01449___ygxA-BPUM_0829___ygxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01449___ygxA-BPUM_0829___ygxA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01449___ygxA
# 2: BPUM_0829___ygxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 905
# Identity: 671/905 (74.1%)
# Similarity: 671/905 (74.1%)
# Gaps: 46/905 ( 5.1%)
# Score: 2371.0
#
#
#=======================================
BSNT_01449___ 1 ATGGAAAATCTTCTCCGTCCAATTTACCAAGAAAGAGCAAGTCACCCCAA 50
||||||||||||||||||||.|||||.|||||.||||||||||||||..|
BPUM_0829___y 1 ATGGAAAATCTTCTCCGTCCTATTTATCAAGAGAGAGCAAGTCACCCAGA 50
BSNT_01449___ 51 TACATTGGCTGTCATTATGATTGAGAGAAGAAACAAAACATCTTCCTTA- 99
.|||||||||||.|||||..|.||.||||||.|||||..||||| ||.|
BPUM_0829___y 51 CACATTGGCTGTGATTATAGTAGAAAGAAGACACAAAGTATCTT-CTGAG 99
BSNT_01449___ 100 ACAGATAACTTTGATGCAG--CTTTGCTGGTGATTGTAAAGGATGCTGAT 147
||.|||||||||||||||| |||| |.||.||||||||.||.||.||.
BPUM_0829___y 100 ACGGATAACTTTGATGCAGCACTTT--TAGTCATTGTAAAAGAAGCGGAA 147
BSNT_01449___ 148 GAGCCAGTT-TTTATAAAGCATTATGAATTTGATCATCAAACAGCTTCTT 196
||||| ||| |||||.|||||.|||||||.||.|||.|||||||||||||
BPUM_0829___y 148 GAGCC-GTTATTTATCAAGCACTATGAATCTGCTCACCAAACAGCTTCTT 196
BSNT_01449___ 197 TGCATGTGGTAACAGATTCTCAGATTCAA-GAATGGATTTTGCTTGGAAC 245
|..||||.||.||||||...||| ||.|| |||||||||...|||||.||
BPUM_0829___y 197 TAAATGTTGTCACAGATGAGCAG-TTGAAGGAATGGATTACCCTTGGCAC 245
BSNT_01449___ 246 AAATAGAAGAATCATAGATTGGATTGTAAATGGCAGAGTCTTGTTTGACC 295
.|||.|..|.|||||.|||||||||.|||||||.|.||||.|.|||||.|
BPUM_0829___y 246 GAATCGCCGTATCATTGATTGGATTTTAAATGGGAAAGTCCTATTTGATC 295
BSNT_01449___ 296 GTAATGAAT---------ACGTAGTTGAACTGATTGACAGGCTGAATACA 336
|.||||||| ||.||.|||| |||| ||||.||||
BPUM_0829___y 296 GAAATGAATATATTTTCAACTTAATTGA------TGAC---CTGAGTACA 336
BSNT_01449___ 337 TTTCCGTTTGCCGAACGTAAACTGAAGATCGGACTCGAATACGGCAA-AT 385
||.||.|||.|..|.||.|||||.||.|||||..|.||||||||||| .|
BPUM_0829___y 337 TTCCCATTTTCAAACCGCAAACTTAAAATCGGTTTAGAATACGGCAAGCT 386
BSNT_01449___ 386 TAATCAGAAGGTATGTTGAAGGGAAAGCTTTTTTTGAAGCCAATCAATTT 435
||.|| ||||||||.|.|||||.|||||.||||||||..|.||||||||.
BPUM_0829___y 387 TATTC-GAAGGTATATAGAAGGAAAAGCATTTTTTGAGTCAAATCAATTC 435
BSNT_01449___ 436 TTAGATGCCTACAACGCCGTTGTTCATGCGCTGCATCATTTAGCACGTAT 485
.|.|||||.||.||..|..||||.|||||||||||||||||.||||||||
BPUM_0829___y 436 CTTGATGCATATAATTCAATTGTGCATGCGCTGCATCATTTGGCACGTAT 485
BSNT_01449___ 486 TGAAGTAATCGACAGAGGATTCCATCCCGAAACCACGGTGTGGAGCCAAG 535
||||||.|||||.|.|||.||||||||.|||...||.||.||||..||.|
BPUM_0829___y 486 TGAAGTCATCGATAAAGGCTTCCATCCAGAAGTGACAGTTTGGAATCAGG 535
BSNT_01449___ 536 TGCGCCAGATGGAGCCGCAAGTGTACAAGTTATATTCCGAGCTGATTGAA 585
|.||.||.|||||.|||.||||.||.||..|.|||||.||.||.||||||
BPUM_0829___y 536 TACGACATATGGAACCGGAAGTTTATAAACTTTATTCAGAACTCATTGAA 585
BSNT_01449___ 586 AGTCACGAGAGCCTGGAAAAAAGACTTGAATTATTATTCTTAGCAAATGA 635
||.||.||.|||||..|.||..|..|.|||.|.|||||.|||||||||||
BPUM_0829___y 586 AGCCATGAAAGCCTTCATAAGCGTTTGGAACTTTTATTTTTAGCAAATGA 635
BSNT_01449___ 636 TTTTCTCATCCATTCCAAAGCCGAGATCGGTTCGGCGCATC-TTTTCG-- 682
.|||.|.||||||||.|||||.||.||.|| ||.||| || |||.||
BPUM_0829___y 636 CTTTTTGATCCATTCAAAAGCAGAAATTGG--CGCCGC-TCATTTGCGTC 682
BSNT_01449___ 683 AAGTAATGAAAGAAAAAGACATTTGGCAATTCGGTGAGCTTCTTCAACAT 732
|.||.|||.||.|..||||.||.||||..||.||.||||||||....|||
BPUM_0829___y 683 ATGTCATGGAACAGCAAGATATATGGCTTTTTGGAGAGCTTCTCGCGCAT 732
BSNT_01449___ 733 CATGACCTAAAGCACTTTACCCAAGATCTTGGCGTTATGCTTGATTACTT 782
|.||||||.|||.|.|||||.|..||.|||.||||.|||.||||||.|||
BPUM_0829___y 733 CCTGACCTCAAGTATTTTACGCCTGACCTTAGCGTCATGATTGATTTCTT 782
BSNT_01449___ 783 GACAGAAAAGGGACTT-ATCAACGT-CTGCCAGATAGAAACGAAAGGACA 830
....|||||.|||.|| .|||| || ..||| |||.||.||.||.|||||
BPUM_0829___y 783 TGTGGAAAAAGGAATTGTTCAA-GTGGAGCC-GATTGAGACAAAGGGACA 830
BSNT_01449___ 831 GGCTGTCTATCACCGAGGATATTCTTTTAAAAAAGGTGTTGACTCTGATT 880
.....|||||||.||||||||||.|.|.|||||||.||||||| .
BPUM_0829___y 831 AAAAATCTATCATCGAGGATATTTTGTGAAAAAAGATGTTGAC------G 874
BSNT_01449___ 881 CTTGA 885
|||||
BPUM_0829___y 875 CTTGA 879
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