Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01442 and BPUM_0818
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:02
# Commandline: needle
# -asequence dna-align/BSNT_01442___ygaD.1.24716.seq
# -bsequence dna-align/BPUM_0818.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01442___ygaD-BPUM_0818.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01442___ygaD-BPUM_0818.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01442___ygaD
# 2: BPUM_0818
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1768
# Identity: 1283/1768 (72.6%)
# Similarity: 1283/1768 (72.6%)
# Gaps: 50/1768 ( 2.8%)
# Score: 4479.0
#
#
#=======================================
BSNT_01442___ 1 GTGGGGGTTATGAAACGCTACATGCAATTCGTCAAACCTTATAAGAAGCA 50
.|||||||.||.|||||.||||||...||.||.|.|||.|||||.||.||
BPUM_0818 1 ATGGGGGTCATTAAACGTTACATGGCTTTTGTAACACCGTATAAAAAACA 50
BSNT_01442___ 51 AATTTTCGTT-ACAGTGTTAATCGGGATCGTAAAATTCTCCATTCCGCTT 99
.| ||.|.|| |||.||.|.||||||||..|.||.|||||.|||||
BPUM_0818 51 GA-TTGCATTGACAATGGTCATCGGGATGATCAAGTTCTCGATTCC---- 95
BSNT_01442___ 100 GCTCTCCCATTGCTTCTG------AAGTACGTAGTTGACGACATTATTCA 143
|| |..||||||.|||| |||||.||..||||.||..|.|||||
BPUM_0818 96 -CT-TAACATTGCCTCTGCTTTTAAAGTATGTCATTGATGATGTCATTCA 143
BSNT_01442___ 144 AGGAGGCGGCACGGCCAGTGACAAAACCACGTCAT---TGTTCACGATTA 190
|||....||..|||| ||||.|||..||.|||| |..|.|.|||||
BPUM_0818 144 AGGCTCGGGGTCGGC---TGACGAAAAGACATCATCTCTACTGATGATTA 190
BSNT_01442___ 191 TGGCGATCATGTTCGCCTTATTTTTAATTTTGCGCCCGCCTGTTGAATAT 240
|||..||||||.|||.||||||||||.|..||.|.||||||||||||||.
BPUM_0818 191 TGGGAATCATGCTCGTCTTATTTTTAGTGATGAGACCGCCTGTTGAATAC 240
BSNT_01442___ 241 TACCGGCAATATTTTGCCCAGTGGACTGCCAGCAAGGTGCTTTATGATAT 290
||..|.|||||.|.|||.||||||||.|.|||.||.||..|.|.||||||
BPUM_0818 241 TATAGACAATACTATGCGCAGTGGACAGGCAGTAAAGTATTATTTGATAT 290
BSNT_01442___ 291 AAGAGCTAAGCTGTTTGACCATATACAAAAACTGAGCCTACGTTTTTACG 340
..|||..||.||||||...|||||.|||||.||.|||||.||||.|||.|
BPUM_0818 291 TCGAGAAAAACTGTTTTCGCATATTCAAAAGCTCAGCCTTCGTTATTATG 340
BSNT_01442___ 341 CGAATACAAGAACAGGGGAAGTCATTTCCCGAGTGATTAATGATGTAGAA 390
|.||.||.||||||||.|||.|||||||..||||.||.||.|||||.||.
BPUM_0818 341 CCAACACGAGAACAGGAGAAATCATTTCTAGAGTTATCAACGATGTGGAG 390
BSNT_01442___ 391 CAAACAAAGGATTTCGTCATCACAGGGCTTATGAATATATGGCTCGATAT 440
||.|||||.||.||.|||||||||||.|||||||||||.|||||.|||.|
BPUM_0818 391 CAGACAAAAGAGTTTGTCATCACAGGTCTTATGAATATTTGGCTTGATTT 440
BSNT_01442___ 441 GCTGACGATTTTGATTGTAATCTCGATCATGCTCACACTGGACGTTAAAT 490
|.||||..|..|.||.||.|||.|.||.|||...|||||||||.|.||..
BPUM_0818 441 GATGACCGTGCTCATCGTGATCGCCATTATGTGTACACTGGACATCAAGC 490
BSNT_01442___ 491 TAACGCTGATCTCTATCGTTTTATTCCCATTATACGGAATATCAGTGAAG 540
|.||..|..|.|||.||.||.|.||.||.|||||.|...|..||||||||
BPUM_0818 491 TCACCATCGTGTCTGTCATTATTTTTCCGTTATATGCGTTTGCAGTGAAG 540
BSNT_01442___ 541 TATTTTTACGGCCGTTTACGAAAGCTGACAAGGGAGCGCTCACAGGCTCT 590
|.||||||||||.|..|.||.||||||||||..|||||.||||||||.||
BPUM_0818 541 TTTTTTTACGGCAGGCTCCGCAAGCTGACAAAAGAGCGGTCACAGGCGCT 590
BSNT_01442___ 591 TGCTCAAGTGCAGGGGCATTTGCACGAACGCATTCAAGGCATGCCTGTCA 640
.|||.|||||||.||||||.|.||.||.||..|.|||||.|||||.||||
BPUM_0818 591 GGCTGAAGTGCAAGGGCATCTACATGAGCGGGTACAAGGAATGCCAGTCA 640
BSNT_01442___ 641 TCAGAAGCTTTGCGATAGAAGATCATGAACAGGCTCAATTTAATGA-GA- 688
|..|.||||||||.||.|||||..|||||||.|...|.|||.|||| ||
BPUM_0818 641 TTCGGAGCTTTGCCATTGAAGAATATGAACAAGAGAATTTTCATGATGAA 690
BSNT_01442___ 689 ---AAAACGGGCATTTCTTAGATAAAGCCATCCGCCACACGAATTGGAAC 735
|||| ||||||||.|.|||||.|||..|||.||||||||||||
BPUM_0818 691 AATAAAA-----ATTTCTTAAACAAAGCGATCAACCATACGAATTGGAAC 735
BSNT_01442___ 736 GCCAAAACCTTTGCGGTCGTTAATACCATTACAGATTTGGCGCCGCTCAT 785
||||||||.|||||.|||||.|||||||||||.|||.|.||.||||| ||
BPUM_0818 736 GCCAAAACATTTGCCGTCGTCAATACCATTACTGATATTGCACCGCT-AT 784
BSNT_01442___ 786 CG-TCATAGCGTGCGCCGGGTATTTTGTCATTAATGGACCGCTGACAGTC 834
.| ||||.||.|..|||||.||...|||||||||||||.|.||..|..||
BPUM_0818 785 TGATCATTGCATTTGCCGGCTACACTGTCATTAATGGATCACTTTCGATC 834
BSNT_01442___ 835 GGAACAATGGTCGCGTTTGTCGGATATATTGACAGAATGTACAACCCTGT 884
||.||.|||.|.||.|||||.||.|||||||||.|.|||||||||||..|
BPUM_0818 835 GGGACCATGATTGCCTTTGTTGGTTATATTGACCGGATGTACAACCCGAT 884
BSNT_01442___ 885 TAGAAGGCTGATCAATTCCTCTACAACATTGACACAGTCAATCGCATCAA 934
|.|..|.||.|||||.||.||.||.||.||.||.|||||..|.||.||||
BPUM_0818 885 TCGCCGCCTCATCAACTCATCCACGACTTTAACTCAGTCGGTAGCGTCAA 934
BSNT_01442___ 935 TGGACAGGGTGTTTGAATTTATTGACGAGCCCTATGAACTCACTGACAAA 984
||||..|..|.||||||||||||||.|||||.||.||..|.||.||....
BPUM_0818 935 TGGATCGTATTTTTGAATTTATTGATGAGCCATACGAGGTAACCGATCGG 984
BSNT_01442___ 985 CCAAATGCGATAAAGGCCGATCAGATTCGCGGAGGAGTGGAGTTTCAAAA 1034
||.|||||.|.|.|.||||||||..|....||||..||.||.|||.||.|
BPUM_0818 985 CCGAATGCAAAAGAAGCCGATCATTTAAAAGGAGAGGTCGAATTTAAACA 1034
BSNT_01442___ 1035 CGTTTCGTTTCAATATGAGAAGGACA-----AAGAAAATATTCTTCATGA 1079
.||.||.||||..||||| ||| |.|||.|.|||||.|...|
BPUM_0818 1035 TGTGTCATTTCGTTATGA-----ACACACGCAGGAAGAGATTCTCCGCAA 1079
BSNT_01442___ 1080 TGTATCCTTAAAAGTAAATAGAGGAGAAACTGTAGCTCTCGTCGGCATGA 1129
|.|.|||||.||||||.|.|.||||.||||.||.||.||.||.||.||||
BPUM_0818 1080 TATCTCCTTGAAAGTAGAAAAAGGACAAACGGTTGCACTTGTTGGAATGA 1129
BSNT_01442___ 1130 GCGGAGGAGGAAAATCAACGCTCGTCAGCCTGATCCCAAGATTTTATGAT 1179
||||.||.||.||.||.||||||||||||.|.||.|||||||||||||||
BPUM_0818 1130 GCGGCGGGGGGAAGTCGACGCTCGTCAGCTTAATTCCAAGATTTTATGAT 1179
BSNT_01442___ 1180 GTAACAAGCGGCAGACTGCTG--ATTGATGGGACGGATATTCGCGATTAT 1227
||.||||.|||...||| || |||||.||.|..|||||....||.||.
BPUM_0818 1180 GTGACAAACGGATCACT--TGAAATTGACGGCATTGATATAAAAGAGTAC 1227
BSNT_01442___ 1228 GAAGCAAGAAGCCTTCGCAACCAGGTTGGTATGGTGCTTCAGGATACCTT 1277
.||||||||||||||||.||.||.||.||.||||||||.||||||||.||
BPUM_0818 1228 AAAGCAAGAAGCCTTCGAAATCAAGTCGGCATGGTGCTGCAGGATACATT 1277
BSNT_01442___ 1278 TTTATTTAGTGAAACGATTCGGGAAAATATCGCGATCGGCAAGCCTGATG 1327
..||||.|||||.||||||...|||||.||.|||.|.||..|.||.||.|
BPUM_0818 1278 CCTATTCAGTGACACGATTAAAGAAAACATTGCGGTTGGAGATCCAGAAG 1327
BSNT_01442___ 1328 CCACCCTTGAAGAGAT--AATCGAAGCCGCCAAAGCTGCAAATGCCCATG 1375
||.|..|||||.|.|| ..||| ||.||.|||||.|||||||||||||
BPUM_0818 1328 CCTCTTTTGAAAAAATTGTTTCG--GCTGCAAAAGCGGCAAATGCCCATG 1375
BSNT_01442___ 1376 AATTTATCATGAGTTTTCCAGAAGGATATGAGACCCGGGTGGGAGAACGA 1425
|.|||||.|||..|.||||.|||||||||||.|||..|||.||||||||.
BPUM_0818 1376 ATTTTATTATGTCTCTTCCTGAAGGATATGACACCAAGGTAGGAGAACGG 1425
BSNT_01442___ 1426 GGCGTTAAGCTTTCAGGCGGACAAAAGCAGCGGATCTCAATTGCGCGGGT 1475
|||||.|||||.|||||.||.|||||.||.|||||.||.|||||..||||
BPUM_0818 1426 GGCGTGAAGCTATCAGGTGGTCAAAAACAACGGATTTCCATTGCAAGGGT 1475
BSNT_01442___ 1476 ATTCCTGAAAAATCCGCCGCTCCTCATTTTAGATGAAGCTACATCAGCTC 1525
.||.||.||||||||.|||||..|.||||||||||||||.||.||.||.|
BPUM_0818 1476 CTTTCTAAAAAATCCACCGCTGTTGATTTTAGATGAAGCAACGTCTGCAC 1525
BSNT_01442___ 1526 TGGATTTGGAAAGTGAGCATTACATTCAAGAAGCGATGGACAAACTGGCG 1575
|.|||||.||||||||.|||||||||||||||||||||.|.||.||.|||
BPUM_0818 1526 TAGATTTAGAAAGTGAACATTACATTCAAGAAGCGATGCAAAAGCTAGCG 1575
BSNT_01442___ 1576 AAGGATAGAACAACTTTTGTTGTCGCCCACCGTTTATCGACAATCACCCA 1625
|||||..|.|||||.|||.|||||||.|||||.||.||.|||||.||.||
BPUM_0818 1576 AAGGACCGCACAACCTTTATTGTCGCACACCGCTTGTCAACAATTACACA 1625
BSNT_01442___ 1626 TGCGGATAAGATTGTTGTCATGGAAAACGGCACAATCATTGAAATCGGAA 1675
|||.||....|||||.|||||||||.|.|||...||..|.||||..||||
BPUM_0818 1626 TGCTGACCTCATTGTCGTCATGGAACAAGGCGAGATTGTGGAAAAAGGAA 1675
BSNT_01442___ 1676 CCCATGATGAACTCATGGACTATGAGAGCCAGTACAAGCATTTATTTACC 1725
|.||.||.|||.|.|||.||...||.|||||.||....|||.|.||||||
BPUM_0818 1676 CACACGAAGAATTAATGAACAGAGACAGCCACTATCGCCATCTTTTTACC 1725
BSNT_01442___ 1726 ATTCAAAATTTGAACTAA 1743
|||||||..||.||.||.
BPUM_0818 1726 ATTCAAACATTAAATTAG 1743
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