Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04952 and BPUM_0807
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:41
# Commandline: needle
# -asequence dna-align/BSNT_04952___yvrI.1.24716.seq
# -bsequence dna-align/BPUM_0807___yvrI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04952___yvrI-BPUM_0807___yvrI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04952___yvrI-BPUM_0807___yvrI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04952___yvrI
# 2: BPUM_0807___yvrI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 696
# Identity: 409/696 (58.8%)
# Similarity: 409/696 (58.8%)
# Gaps: 150/696 (21.6%)
# Score: 1112.5
#
#
#=======================================
BSNT_04952___ 1 ATGGACTATCAAAGTCTTTTACGG---TCAAAATGTAAGGAGATAATGAA 47
|||||.|||| |.||.|||..| .|||||||.||.||.||.||..|
BPUM_0807___y 1 ATGGATTATC---GGCTGTTATTGAAAGCAAAATGGAATGAAATCATTGA 47
BSNT_04952___ 48 GCATCCCA-TCGTGAAGCATTTTTTGAGCAATCC------TCAGCA---- 86
.|| |||| ||.|..||||.|||||.|||||.|| ||||||
BPUM_0807___y 48 TCA-CCCACTCATTCAGCAATTTTTAAGCAACCCTAAAAATCAGCAGCTG 96
BSNT_04952___ 87 -TTACCGTTTGTTCAAAAACGTAATGGAA-AGCCCTAACGAAAAAGATGC 134
| ||| .||| ||.|||||| || ||.||||||.||.||||
BPUM_0807___y 97 CT--CCG-----GCAA----GTCATGGAAGAG-CCAAACGAAGAAAATGC 134
BSNT_04952___ 135 AAAATCATTGGA---CGAGCTATTTAAGCAGTTTTATAAAGAAATCCGCA 181
.|||..|.|.|| |||| ||.||||||||||||.||.|||||||||
BPUM_0807___y 135 GAAAAAACTAGATTCCGAG---TTCAAGCAGTTTTATCAAAAAATCCGCA 181
BSNT_04952___ 182 TCGTCAAGTATATGAATT---CAATGATTCGCATCTTTTCTATTGATTTT 228
||.|||||||||| || |||||||.|||||||||||..|.||.|||
BPUM_0807___y 182 TCATCAAGTATAT---TTCCACAATGATCCGCATCTTTTCAGTCGACTTT 228
BSNT_04952___ 229 GATAAGCGGGTTCGCAAAAACCAAA-----AACGGTATCCGCTGACGGTT 273
|||||.||.|| |||||| ||| |.||.|.||||||.|...|.
BPUM_0807___y 229 GATAAACGAGT---CAAAAA--AAAGCAGCAGCGATTTCCGCTCATACTC 273
BSNT_04952___ 274 GATCATCC---------GGAGGCGGGAGATCGGCTTCCTTCCGAAACAGG 314
|||||||| .||.|.|..|||.|...||| |||||
BPUM_0807___y 274 GATCATCCTGATACACAAGAAGTGAAAGACCCTGTTC------AAACA-- 315
BSNT_04952___ 315 TAGCGATGCATTTGAAG----AATTTTTAGACAGGCAGGATGATTTGAGC 360
|||.|.|.||||| ..|.|| ||..|||.|.||.||..|.
BPUM_0807___y 316 ----GATACGTATGAAGCCGTGCTCTT----CAACCAGCAAGACTTAGGG 357
BSNT_04952___ 361 CAGCATGTACAGGA---------TTACCAGCTCTACCAAGCGATCCAGAA 401
.||||..||||.|| .|||.||..||| ||||.|
BPUM_0807___y 358 GAGCACCTACAAGACAAAAGATTGTACAAGGCCTA---------CCAGCA 398
BSNT_04952___ 402 GCTGACTGACAAACAAAAAAGTGTGCTGACGAAAGTCTATCTTCACGGTG 451
.||.||.|||||||||||||..||..|.||..|..|.|||.||.|.|||.
BPUM_0807___y 399 ACTCACAGACAAACAAAAAATGGTCTTAACCCATATTTATGTTGAAGGTC 448
BSNT_04952___ 452 CCACGATGCAGGAGATTGCAGATTCATTAGGGGAGTCCCGACAAAACATT 501
..||.|||.|.||.||.||.||.....||||.||..|..||||||||||.
BPUM_0807___y 449 AAACAATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATC 498
BSNT_04952___ 502 TCCAACATTCATAAAAAGGGGCTGGAGAA--TATCAGAAAGCAGCTAGCG 549
||.|||||.||.|||||.|.|||..|.|| || ||||.||
BPUM_0807___y 499 TCAAACATCCACAAAAAAGCGCTCAACAAACTA----AAAGAAG------ 538
BSNT_04952___ 550 GCGCAAAAAAGGGGGAAAAGTAAGCTGTGGACGGCCAGTTTGAACAAAAA 599
|||.|||||||.|.|| |.|||.|| |||.|||||
BPUM_0807___y 539 -----AAACAGGGGGAGATGT---CCGTGAAC---------GAAGAAAAA 571
BSNT_04952___ 600 AAGA------AACAAAAAGACGAGACTTATGACATTGAGCATCTGA 639
|.|| .|.|||..||.|| ||| ||||||
BPUM_0807___y 572 ATGACGAATGGAGAAATGGAAGA-ACT-----CATTGA-------- 603
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