Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04954 and BPUM_0806

See Amino acid alignment / Visit BSNT_04954 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:41
# Commandline: needle
#    -asequence dna-align/BSNT_04954.1.24716.seq
#    -bsequence dna-align/BPUM_0806.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04954-BPUM_0806.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04954-BPUM_0806.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04954
# 2: BPUM_0806
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 176
# Identity:     103/176 (58.5%)
# Similarity:   103/176 (58.5%)
# Gaps:          34/176 (19.3%)
# Score: 244.0
# 
#
#=======================================

BSNT_04954         1 ATGGATCAGG----TTTTTATAGAGGAAGTCG-TAAAACAGATCGG-CAA     44
                     |||||    |    |||||...|||||| |.| |.||.|||.|||| ||.
BPUM_0806          1 ATGGA----GACCTTTTTTTCGGAGGAA-TGGCTGAAGCAGCTCGGTCAG     45

BSNT_04954        45 TTTGGGGTTTCCCGCGCTGATTG-CAATGTATCTGCTGACCCGATTCGAA     93
                     ..| ||.|||||.|| |...||| |..|.|||.|||||||.||.||.|||
BPUM_0806         46 GCT-GGCTTTCCTGC-CATTTTGACGGTTTATTTGCTGACACGTTTTGAA     93

BSNT_04954        94 AAGAAGTTTGATCAACTAATAGAACTAATGACAGAACTGAAAGATC---A    140
                     ...|||||||||.||.|||...|.|||||   ..||| ||..|.||   .
BPUM_0806         94 CGAAAGTTTGATGAATTAAGCAAGCTAAT---CCAAC-GATTGGTCGCTG    139

BSNT_04954       141 TGCAAAAAAATAA-------------    153
                     |.|||||||||.|             
BPUM_0806        140 TTCAAAAAAATGATGAATCAGATTGA    165


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.