Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04956 and BPUM_0805
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:41
# Commandline: needle
# -asequence dna-align/BSNT_04956___oxdC.1.24716.seq
# -bsequence dna-align/BPUM_0805___oxdC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04956___oxdC-BPUM_0805___oxdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04956___oxdC-BPUM_0805___oxdC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04956___oxdC
# 2: BPUM_0805___oxdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1221
# Identity: 859/1221 (70.4%)
# Similarity: 859/1221 (70.4%)
# Gaps: 120/1221 ( 9.8%)
# Score: 2927.0
#
#
#=======================================
BSNT_04956___ 1 ATGA---AAAAACAAAATGACATTCCGCAGCCAATTAGAGGAGACAAAGG 47
|||| ||||.|||||||...|.||.|||||.|||.|||||||.|||||
BPUM_0805___o 1 ATGAGTGAAAAGCAAAATGGTGTACCACAGCCGATTCGAGGAGAAAAAGG 50
BSNT_04956___ 48 AGCAACGGTAAAAATCCCGCGCAATATTGAAAGAGACCGGCAAAACCCTG 97
|||||||||.|||||.||.||.|||.|.||..|||||.|.||||||||.|
BPUM_0805___o 51 AGCAACGGTCAAAATTCCACGTAATCTCGAGCGAGACAGACAAAACCCAG 100
BSNT_04956___ 98 ATATGCTCGTTCCGCCTGAAACCGATCATGGCACCGTCAGCAATATGAAG 147
||||||||...||.||.||||||||||||||.||.||...|||.|||||.
BPUM_0805___o 101 ATATGCTCACGCCACCAGAAACCGATCATGGAACGGTTCCCAACATGAAA 150
BSNT_04956___ 148 TTTTCGTTCTCTGATACTCATAACCGATTAGAAAAAGGCGGATATGCCCG 197
|.|||.||.||||||||.||.|||||.||||||||||||||.||.|||.|
BPUM_0805___o 151 TATTCTTTTTCTGATACGCACAACCGTTTAGAAAAAGGCGGTTACGCCAG 200
BSNT_04956___ 198 TGAAGTGACAGTACGTGAATTGCCGATTTCAGAAAACCTTGCATCCGTAA 247
.|||||.||.|||||||||.||||.||.||..|||..|||||.||.||.|
BPUM_0805___o 201 AGAAGTCACGGTACGTGAACTGCCAATCTCTAAAAGTCTTGCCTCTGTGA 250
BSNT_04956___ 248 ATATGCGGCTGAAGCCAGGTGCGATTCGCGAGCTTCACTGGCATAAAGAA 297
|.||||||||.|||||.|||||.|||||||||||.|||||||||||||||
BPUM_0805___o 251 ACATGCGGCTAAAGCCTGGTGCAATTCGCGAGCTGCACTGGCATAAAGAA 300
BSNT_04956___ 298 GCTGAATGGGCTTATATGATTTA--CGGAAGTGCAAGAGTCACAATTGTA 345
||.||||||||.||.|||||||| .|||| ||..|..|.|||...||.
BPUM_0805___o 301 GCGGAATGGGCGTACATGATTTATGGGGAA--GCCCGGATTACATCGGTT 348
BSNT_04956___ 346 GATGAAAAAGGGCGCAGCTTTATTGACGATGTAGGTGAAGGAGACCTTTG 395
||||.|.|.||.||||..||||..||.|||||...|||.||.||..|.||
BPUM_0805___o 349 GATGCAGAGGGACGCAATTTTACAGAGGATGTGACTGAGGGTGATTTGTG 398
BSNT_04956___ 396 GTACTTCCCGTCAGGCCTGCCGCACTCCATCCAAGCGCTGGAGGAGGGAG 445
|||||||||.||.|||.|||||||.||.||.|||||.||.||...|||||
BPUM_0805___o 399 GTACTTCCCTTCCGGCTTGCCGCATTCTATTCAAGCACTTGAACCGGGAG 448
BSNT_04956___ 446 CTGAGTTCCTGCTCGTATTTGACGATGGATCATTCTCTGAAAACAGCACG 495
||||.|||.||||.||.|||||.|||||.||.|||||||||||.||.|||
BPUM_0805___o 449 CTGAATTCTTGCTTGTGTTTGATGATGGTTCCTTCTCTGAAAATAGTACG 498
BSNT_04956___ 496 TTCCAGCTGACAGATTGGCTGGCCCACACTCCAAAAGAAGTCAT-TGCTG 544
|||||..||||.||||||||.|||||.||.|||.|.||||| | ||||.
BPUM_0805___o 499 TTCCAAGTGACTGATTGGCTTGCCCATACGCCAGAGGAAGT--TGTGCTC 546
BSNT_04956___ 545 C-GAACTTTGGCGTGACAAAAGAAGAGATTGCCAATTT----ACCTGGCA 589
| .||||||||..|||||||.|| .|||||| |.|||.||
BPUM_0805___o 547 CAAAACTTTGGAATGACAAAGGA--------GCAATTTGAGAAACTGCCA 588
BSNT_04956___ 590 AAGAAAAATA--TATATTT---GAAAACCAACTTCCTGG-------CAGT 627
.|||||.|.| ||||||| .||||..|| ||||||| .|||
BPUM_0805___o 589 GAGAAAGAGAAGTATATTTTCCAAAAAGGAA-TTCCTGGTTCCCTTGAGT 637
BSNT_04956___ 628 -TTAAAAGATGATATTGTGGA-AGGGCCAAATGGCGAAGTGCCTTATCCA 675
|.|.|||.|||.| | ||||| |.||.|||||.||..||.|.
BPUM_0805___o 638 GTGACAAGGTGAAA------ACAGGGC---AAGGGGAAGTCCCAAATTCC 678
BSNT_04956___ 676 TTTACTTACCGACTTCTT-GAACAAGAGCCGAT--CG--AATCTGAGGGA 720
||||..|| .||.||.|| .||||||||||||| || ||.| ||.
BPUM_0805___o 679 TTTAAATA-TGAGTTGTTAAAACAAGAGCCGATTACGTCAAGC----GGT 723
BSNT_04956___ 721 GGAAATGTATACATTGCAGATTCGACAAACTTCAAAGTGTCTAAAACCAT 770
|||.|.||.|..|||||.|||||.||.||.|||||||.|||||||||.||
BPUM_0805___o 724 GGACAAGTGTGGATTGCGGATTCTACCAATTTCAAAGCGTCTAAAACGAT 773
BSNT_04956___ 771 CGCATCAGCGCTCGTAACAGTAGAACCCGGCGCCATGAGAGAACTGCACT 820
.||.||.||.||.||.|.|||.||.||.||||||||..|.||.|||||||
BPUM_0805___o 774 TGCCTCTGCTCTAGTGAAAGTCGATCCAGGCGCCATTCGTGAGCTGCACT 823
BSNT_04956___ 821 GGCATCCGAATACCCACGAATGGCAATACTACATCTCCGGTAAAGCTAGA 870
|||||||.|||||..|.|||||||||||.|.|||.||.||.||.||..||
BPUM_0805___o 824 GGCATCCAAATACGGATGAATGGCAATATTTCATTTCTGGAAAGGCACGA 873
BSNT_04956___ 871 ATGACCGTTTTTGCATCTGACGGCCATGCCAGAACGTTTAATTACCAAGC 920
|||||.||.|||||.|||||.||.|||||.|||||.||.||.||.||.||
BPUM_0805___o 874 ATGACGGTATTTGCTTCTGATGGACATGCGAGAACCTTCAACTATCAGGC 923
BSNT_04956___ 921 CGGTGATGTCGGATATGTACCATTTGCAATGGGTCATTACGTTGAAAACA 970
.||.||.||.||.|||||.||||||||.|||||.|||||.||.|||||.|
BPUM_0805___o 924 GGGAGACGTTGGCTATGTGCCATTTGCGATGGGGCATTATGTAGAAAATA 973
BSNT_04956___ 971 TCGGGGATGAACCGCTTGTCTTT-TTAGAAATCTTCAAAGA-CGACCATT 1018
..||.||.||||||||| |.||| |||||||||||| |||| ||||||||
BPUM_0805___o 974 CAGGTGACGAACCGCTT-TATTTCTTAGAAATCTTC-AAGAGCGACCATT 1021
BSNT_04956___ 1019 ATGCTGATGTATCTTTAAACCAATGGCTTGC-------------CATGC- 1054
||||.|||.|.||..|.||.||.|||||||| || ||
BPUM_0805___o 1022 ATGCAGATATCTCGCTCAATCAGTGGCTTGCGGTCACACCGAAACA-GCT 1070
BSNT_04956___ 1055 --TTCCTGAAACATTT-GTTCAAGCACACCTTGACTTGGGCAAAGACTTT 1101
|||.|| |.||||| |.|||| ||..||||.||
BPUM_0805___o 1071 TATTCTTG-ATCATTTAGATCAA---------------GGTGAAGAATT- 1103
BSNT_04956___ 1102 ACTGATG----TGCTTTCAAAAGAAAAGCACCCAGT----------AGTG 1137
|| || |||||...|..|||||.|||||.|| ..|.
BPUM_0805___o 1104 -CT--TGAAATTGCTTGATACTGAAAAACACCCTGTCATCGCTGCGCCTA 1150
BSNT_04956___ 1138 AAAAAGAAATGCAGTAAATAA 1158
||||||| |.|.|.|
BPUM_0805___o 1151 AAAAAGA---GGATTGA---- 1164
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