Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01416 and BPUM_0794
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:00
# Commandline: needle
# -asequence dna-align/BSNT_01416___yfhF.1.24716.seq
# -bsequence dna-align/BPUM_0794___yfhF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01416___yfhF-BPUM_0794___yfhF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01416___yfhF-BPUM_0794___yfhF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01416___yfhF
# 2: BPUM_0794___yfhF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 989
# Identity: 621/989 (62.8%)
# Similarity: 621/989 (62.8%)
# Gaps: 169/989 (17.1%)
# Score: 1892.0
#
#
#=======================================
BSNT_01416___ 1 ATGAATATCGCAATGACGGGCGGAACCGGTTTTCTCGGCCAGCATCTGAC 50
.||||||||||.||.||.||.||||||||||||.|||||||||||.|.||
BPUM_0794___y 1 TTGAATATCGCCATCACCGGAGGAACCGGTTTTATCGGCCAGCATGTCAC 50
BSNT_01416___ 51 AGGCGTTCTTACCCGC----CAGGGACACCATGTTTATATTTTATCAAGA 96
....||.|| ||| .|.|||||.|||.|.|||||||||.|||||
BPUM_0794___y 51 GAAAGTGCT----CGCTGCTGAAGGACATCATCTATATATTTTAACAAGA 96
BSNT_01416___ 97 AACGCAAGGGAAGCTGAACAAAAAAATATGACA-TATGTCCAATGGCTGT 145
||..|||.||||.|.||||||||..|| |.||| |||||.||.||||||.
BPUM_0794___y 97 AATCCAAAGGAATCCGAACAAAATCAT-TTACACTATGTGCAGTGGCTGA 145
BSNT_01416___ 146 CGGAAGGAGCCGCACCGGAGCAGGAACTTCCTCATATTGATGTCTGGATA 195
|.|||||.||.||.||.|||||.|||.|.|||...||||||||||||||.
BPUM_0794___y 146 CAGAAGGTGCTGCGCCTGAGCATGAATTGCCTGCGATTGATGTCTGGATT 195
BSNT_01416___ 196 AACCTTGCGGGAAAATCGATTTTTGGCCGCTGGACGGAAA----AAACGA 241
||||||||.||||||||.|||||...|||||||||.||.| |||.||
BPUM_0794___y 196 AACCTTGCTGGAAAATCCATTTTCACCCGCTGGACAGACAAGGCAAAAGA 245
BSNT_01416___ 242 AGCAGCACATTCTCTCCAGCCGTA-TCAATGCGACGCGTGAAGTGCAG-C 289
|| .|||.|||||.||||||| ||||| |.||.|..|||||| || |
BPUM_0794___y 246 AG----GCATCCTCTCTAGCCGTATTCAAT-CAACACAAGAAGTG-AGAC 289
BSNT_01416___ 290 GGCTTATTCAGAAACAGAAGGAGAAGCCGCAGACA--------------- 324
|..|||| ||||| |||||..|
BPUM_0794___y 290 GCATTAT--------------AGAAG-CGCAGGAATCAAAACCATCTGTG 324
BSNT_01416___ 325 CTGATCCAAGCCAGTGCCGTGGGTATTTACGGCACAAGCCTTGAGAAAAC 374
||.||.|||||.|||||.||.||.|||||.||||| |.|| .||||
BPUM_0794___y 325 CTCATTCAAGCAAGTGCTGTTGGCATTTATGGCAC--GTCT----CAAAC 368
BSNT_01416___ 375 ------CTTTACAGAGGATTCTGCAACGTCAGATGAGGAT-----TTTC- 412
.|||||||||||.|| ||.|| .||.|||| ||||
BPUM_0794___y 369 AGGAGATTTTACAGAGGAATC----ACCTC--CTGCGGATACTGATTTCT 412
BSNT_01416___ 413 TCAGCCATACTGCACACCTGTGGGAAAAGGAAGGACAGCATATTGAGGCG 462
|.||.|||||..|..|.||.||||||...||.||.||..|.|||||.||.
BPUM_0794___y 413 TAAGTCATACATCTAAACTTTGGGAAGCTGAGGGGCAAAAGATTGAAGCA 462
BSNT_01416___ 463 ATGGGCATCAGGACGGTTTATGCGAGATTTGGCGTGATGCTTGGAGAAAA 512
.|.|||||..|.|||||.||..|..|.||.|||||..|..|.||||||||
BPUM_0794___y 463 CTCGGCATTCGTACGGTCTACACACGCTTCGGCGTCGTATTAGGAGAAAA 512
BSNT_01416___ 513 AGGCGCTCTCCCGCTCATGATTCTCCCCTATAAGTTTCTGGCCGGCGGAA 562
|||..|.||.||.||.||||..||.||.|||||..|..|.||.||.||||
BPUM_0794___y 513 AGGGACACTGCCACTAATGACACTGCCATATAAACTATTTGCGGGGGGAA 562
BSNT_01416___ 563 CGATCGGAACGGGAAGGCAGTGGCTGTCATGGATTCATGTCGAGGATGCG 612
||||.||..|.||...|||.|||.|.||||||.||||||||||.||||..
BPUM_0794___y 563 CGATTGGCTCCGGCTCGCAATGGGTTTCATGGGTTCATGTCGAAGATGTA 612
BSNT_01416___ 613 GCCCAGATGATCCGATATGCGGTGGAAAACGCCGGCATCTCAGGCCCAAT 662
||.||..|.||....|||||..|..|.||.|.||.|||||||||.|||.|
BPUM_0794___y 613 GCACATCTCATTGCTTATGCCATACACAATGACGACATCTCAGGTCCACT 662
BSNT_01416___ 663 GAATGTCACCGCGCCCAATCCTGTGGACATGAAGCAATTCGGAAAAACGA 712
.||||||||..|.||.||||||||..|.||||||||..|||||.||||||
BPUM_0794___y 663 CAATGTCACATCACCGAATCCTGTTCAAATGAAGCAGCTCGGACAAACGA 712
BSNT_01416___ 713 TTGCACGGGTGAAG---------CACCGCCCGCACTGGCTCCCCGTCCCG 753
|||| | ||||||||.||||||||....|||||
BPUM_0794___y 713 TTGC---------GTCTGCCCTTCACCGCCCTCACTGGCTGAAGGTCCC- 752
BSNT_01416___ 754 GAATTCTTT-TTAT--CAAAAGCATTGGGTGAAATGAGTCTT---TTGAT 797
||.|||| |.|| .||..|||.|.||.||||| |||.| ||| |
BPUM_0794___y 753 --ATCCTTTGTCATTCGAACGGCACTTGGCGAAAT--GTCATTACTTG-T 797
BSNT_01416___ 798 TGTGAAAGGACAGCGCGCTCTTCCGAAAAAAGCGATAACCTCTGGATTT- 846
|.|..||||.|||||.||.||.|||||.|| ||.| |.|.|||
BPUM_0794___y 798 TTTAGAAGGTCAGCGTGCGCTGCCGAAGAA---GACA-----TTGCTTTC 839
BSNT_01416___ 847 ---------CGTTTTACATATTCGGATCTTGAA--------------TTT 873
|.|||||| |||.|||| |||
BPUM_0794___y 840 TTCTTATGACTTTTTAC--------ATCCTGAATTAAAAGAAGCGATTTT 881
BSNT_01416___ 874 GCACTCTCACAGCTCATAGCGGACCGAAAGACTGTATAA 912
|||.|| |||| |.||||
BPUM_0794___y 882 GCATTC--------------------AAAG---GAATAA 897
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