Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01402 and BPUM_0787
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:59
# Commandline: needle
# -asequence dna-align/BSNT_01402.1.24716.seq
# -bsequence dna-align/BPUM_0787.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01402-BPUM_0787.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01402-BPUM_0787.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01402
# 2: BPUM_0787
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2788
# Identity: 1729/2788 (62.0%)
# Similarity: 1729/2788 (62.0%)
# Gaps: 434/2788 (15.6%)
# Score: 4589.5
#
#
#=======================================
BSNT_01402 1 TTGCTGATTAAAAAGAATGCTTTATCAATATTAAAAATCGTTTTTCCTAT 50
.||..||..|||||.|..|.|.|..|.||.||||||||..|||||||.||
BPUM_0787 1 ATGTGGAACAAAAAAACGGGTATGACGATCTTAAAAATGCTTTTTCCGAT 50
BSNT_01402 51 TGCTGTTTTGCTAT--TTGT-----TATTTATCAATCGAAAAAAGAACTG 93
.| ||.| ||| |||| |.|||.|| .|.||.||.||||||
BPUM_0787 51 CG-TGAT----TATCCTTGTCTTAATTTTTGTC--GCCAAGAAGGAACTG 93
BSNT_01402 94 ACAAATCTGTCATTC--------AAACGTACGCTCATGGTCATCAACGGA 135
|.|.|.|.||| |||||| .|.|| .||||..||.|
BPUM_0787 94 ----AGCGGCCTTTCCATTAAAAAAACGT---TTTAT-ATCATTGACAG- 134
BSNT_01402 136 CTGGAA-CGAACTGACTTATTTATGCTTGTGTTGATCGG-CTTGCTGGC- 182
||.||| ||||..|||||.|||||.|||||.||..|.|| |||| |.||
BPUM_0787 135 CTTGAATCGAATGGACTTGTTTATTCTTGTCTTTCTTGGTCTTG-TCGCA 183
BSNT_01402 183 -TGTTGCGGCCATGTCGCTGTATGA-------TTACG-----TCCTGAAA 219
|||| ..|.|||||..|.||||| ||||| .||||||
BPUM_0787 184 GTGTT--ATCTATGTCCTTATATGATTTTATTTTACGAAAAAGCCTGAA- 230
BSNT_01402 220 TACTCACTTCGCCTAT--CGATCA-CAAACGGAAAAGTATTCAGGGTTTC 266
||| ||||.| |....||||||..|||| |..||||
BPUM_0787 231 -------------TATGCCGATTAGCGGCTGGAAAACGATTC-GCATTTC 266
BSNT_01402 267 CTGGATCGCCAATTCATTTAATAATGTGCTGGGCTTCGGCGGTTTAGCCG 316
.|||||.||.||.||.||.||.|.|||.||.||.|||||.||||||.|.|
BPUM_0787 267 TTGGATTGCGAACTCCTTCAACAGTGTCCTTGGGTTCGGTGGTTTATCAG 316
BSNT_01402 317 GCGTCGGGTTAAGAATGATGTTATATAAGGAG--CAT-------ACGAAA 357
|.|..|||.|.||||...|..||||.|||||| ||| ||||||
BPUM_0787 317 GAGCAGGGCTTAGAACACTTCTATACAAGGAGTACATAACCGACACGAAA 366
BSNT_01402 358 GACCATAAGGCACTCGTGAAAGGAATCGCC----TGGCTCACATCATCTA 403
.| |||..|.|||||.||.||| || ||.||.|||.
BPUM_0787 367 AA---------ACTACTCAAAGGCATTGCCCTTTTG----ACCTCCTCTG 403
BSNT_01402 404 TGCTGCTCGGATTATCTGTTTTCAGC------ATTTTCGTCGCTGCGAGA 447
|.||..|.||.||||||.|||||||| ||.||.|| |||.
BPUM_0787 404 TCCTTTTGGGCTTATCTATTTTCAGCGACCTGATCTTGGT------GAGG 447
BSNT_01402 448 GTGCTGCCAGTGGATGAAGTGATTCAT----GAAAAGCCTTGGCTATGGG 493
|||||.||.||.|| |||| ||| || .||.||||.||||||||||
BPUM_0787 448 GTGCTTCCTGTTGA--AAGT-ATT-ATCAGCCAAGAGCCGTGGCTATGGG 493
BSNT_01402 494 C---GGTCGTTATCGGTTTTGCGCTGATAT--TGCCGCTGT------CTT 532
| .||..||||| ||||| ||| ||| ||||..|.| .|.
BPUM_0787 494 CCTTTGTGATTATC---TTTGC-CTG-TATCGTGCCCATTTACATTATTA 538
BSNT_01402 533 TGGCGGTGTCCA----AAATAAAAGACCGCAAAGC-----TGGGGACGAA 573
|||| .|||| || ||||| ||.||.||
BPUM_0787 539 TGGC---ATCCATTCGAA------------AAAGCTCGATTGAGGGCG-- 571
BSNT_01402 574 GAGAATGCGGACAAAGTGAAAAATCCGATTTTCGCATATATTGGAGCTTC 623
|.|||.|||||| ||||..|||||||||.|||.||.||.||.||.||
BPUM_0787 572 GTGAAAGCGGAC----TGAAGCATCCGATTTACGCTTACATCGGTGCATC 617
BSNT_01402 624 AGTTGTT-GAATGGCT--CATGGCCGGGATCGTCATCTATTTTGCTTTGT 670
|||.|| |||||||| || ||.||..||||.||.|||.|.|||.||.
BPUM_0787 618 -GTTTTTAGAATGGCTGGCA--GCTGGTCTCGTTATGTATATGGCTGTGG 664
BSNT_01402 671 TCGCTATGGGCATTCATGCAGATATCAGGTATGTGTTCGGGGTGTTCGTC 720
||.|||||||.||..|||..|||.|..||..|||.||.||..|.||.|..
BPUM_0787 665 TCTCTATGGGGATGAATGTCGATGTTCGGATTGTTTTAGGTATATTTGCG 714
BSNT_01402 721 ATTGCGGCGATCGGAGGAATGATCAGCCTCGTGCCGGGCGGCTTCGGCTC 770
||||||.|.||.||.||..|.|||||..|.||.||||||||.||.||.||
BPUM_0787 715 ATTGCGTCAATTGGCGGTTTAATCAGTATGGTTCCGGGCGGATTTGGTTC 764
BSNT_01402 771 GTTTGACCTTTTATTTTTGCTGGGGATGGAGCAGCTTGGCTATCATCAGG 820
.|||||.|||.|.|||||.|||.|.|||.||.|..||||.|.|.||.|.|
BPUM_0787 765 TTTTGATCTTATCTTTTTACTGAGCATGCAGTACATTGGGTTTGATAAAG 814
BSNT_01402 821 AGGCCATCG---TTACTTCTATTGTGTTGTACAGGCTCGCCTATTC-ATT 866
|| ||.| |.|||.|..|.||.||||||.|..|||..||.|| ||.
BPUM_0787 815 AG---ATGGTACTGACTGCGCTCGTTTTGTACCGCTTCGTGTACTCGATC 861
BSNT_01402 867 TATCCCATTTATCTTGGGACTGTTCT-TTGCCGCAGGCGACCTGACGGAA 915
| ||||.||||||.|.||.|| ||.| |.||.||...|||..|.||||.|
BPUM_0787 862 T-TCCCGTTTATCCTAGGGCT-TTGTCTAGCTGCTTACGATTTAACGGGA 909
BSNT_01402 916 AATACAATGAAGCGGCTCGAAACGAACCCGCGCATCGCACCGGCAATTGA 965
|..||..|.|..||.||.|||...||.|||.|.||.|||||.||..|.||
BPUM_0787 910 ACGACGCTTAGACGTCTTGAAGGCAATCCGAGAATGGCACCAGCCGTAGA 959
BSNT_01402 966 GACGACAAACGTTCTGCTTGTTGTT-CAGCGTGCGGTATTAGTGAGAATT 1014
.||.||.|||||..|..||| |||| ||.|||||..|||||.|..|..|.
BPUM_0787 960 AACAACGAACGTCTTAATTG-TGTTGCACCGTGCTTTATTAATCCGTTTA 1008
BSNT_01402 1015 TTGCAAGGCTCGCTTTCCCTTATTGTGTTC-GTAGCAGGTCTGATTGTCT 1063
|||.|.||.||.||.||..||.|....||| |.||| ||..||.||.|..
BPUM_0787 1009 TTGTACGGATCACTATCAATTTTAACCTTCGGAAGC-GGCTTGCTTATTA 1057
BSNT_01402 1064 TGGCCTCAGTT-TCCT---TGCCGATTGA-CAGGC-TGACGGTTATACCG 1107
||||.||.||| |||| ||.||||.|| .|||| ||| ||| ||
BPUM_0787 1058 TGGCGTCTGTTGTCCTTCCTGTCGATCGATTAGGCGTGA---TTA---CG 1101
BSNT_01402 1108 CACATTCCGCGCCCGGCGCTTTTGCT------GTTCAACGGCCTGTCCTT 1151
...|||||.||| .|||||.| .||.||.||.||.||.||
BPUM_0787 1102 AGTATTCCACGC------TTTTTGTTATCAGGTTTTAATGGTCTTTCTTT 1145
BSNT_01402 1152 AA-GCTCAGCACTCATTCTGCTAATTTTGCCGATCGAGCTTTATAAACGG 1200
|| |.||.||| |.||.|||.|..|||||.|.||.||..|.||||||||.
BPUM_0787 1146 AATGTTCGGCA-TTATCCTGATGGTTTTGTCCATTGAAGTGTATAAACGA 1194
BSNT_01402 1201 ACAAAACGTTCCTACACGATGGCCATTACAGCGCTTGTCGGCGGCTTTGT 1250
||.|||.|.||.|||..|.|..|.||.|..||.||.|..|||||||||||
BPUM_0787 1195 ACGAAAAGATCGTACGTGCTAACAATGATCGCCCTAGCAGGCGGCTTTGT 1244
BSNT_01402 1251 GTTCAGCTTT-TTAAAAGGGCTTAACATCAGCGCGATATTCGTACTGCCG 1299
|||.| |||| ||||||||..|||||.|.||...|||.||..||.||||.
BPUM_0787 1245 GTTTA-CTTTGTTAAAAGGATTTAACCTGAGTCTGATCTTTATATTGCCA 1293
BSNT_01402 1300 ATGATTAT---CGTATTGCTTGTGCTATT-GAAAAAACAATTTGTCCGCG 1345
.|.||.|| .||||| ||...||.|| | |||.|||||||| |
BPUM_0787 1294 GTCATCATGGCTGTATT--TTTCTCTCTTCG--AAATCAATTTGT----G 1335
BSNT_01402 1346 AA----CAGGCATCCTATACACTGGGACAATTGATATTCGCTGTGG---- 1387
|| |||||..|.|||.|..||...||.|| |||||
BPUM_0787 1336 AAGCAGCAGGCCCCTTATTCGTTGTATCAGTT---------TGTGGCGGC 1376
BSNT_01402 1388 ---CGCTG----TTTACT-GTGGCGCTCTTTAACTACAATCTGATCGCGG 1429
||||| |||||| || |||.||||||||.|||.|.||||...
BPUM_0787 1377 TGCCGCTGGTTATTTACTCGT---GCTATTTAACTATAATGTCATCGGCA 1423
BSNT_01402 1430 GCTTTATTTGGGACCGGATGAAGAAGGTGC------TGCGTCACGAATAT 1473
.|||||||| ||||| ||.|..|.|| ||.||.|.||.||.
BPUM_0787 1424 ACTTTATTT-GGACC-----AAAATTGGGCATTTCTTGAGTAAGGATTAC 1467
BSNT_01402 1474 TTCGTCCACA--GCACCTCGCATATTACACATG-CAACCATCATGGCGAT 1520
.|.||.||.| |.|| .||||||.||| ||| |||.|||.||.|||.|
BPUM_0787 1468 CTTGTGCATAATGAAC--GGCATATCACA-ATGACAAGCATGATTGCGCT 1514
BSNT_01402 1521 CATCATTGTGCCGCTGTTCTTCTTGATATTTACAGTGGTCTATCATAAGA 1570
||||..|||.|||||.||||||||.||...||.|.||.|.|.|.||||
BPUM_0787 1515 CATCGGTGTACCGCTTTTCTTCTTCATTAGTAAATTGATTTTTAATAA-- 1562
BSNT_01402 1571 GAACGAAA-------CCGATCGGAGAGCAAGCTGACCCTGAGCGTCTTGC 1613
||| |||||.|||||..||||.|| ||||
BPUM_0787 1563 -----AAAAGCATTTCCGATTGGAGAAAAAGCAGA---TGAG-------- 1596
BSNT_01402 1614 TG------------CGTTTCTTA-ATGAAAAAGGCGGCAACGCGCTGAGC 1650
| |.||| ||| |.|||||.||.|||||.||.||.||.
BPUM_0787 1597 -GAAAAATTAAAAACATTT-TTAGAAGAAAAGGGTGGCAATGCCCTTAGT 1644
BSNT_01402 1651 CATCTCGGTTTTCTTGGAGATAAGCGGTTTTATTTTTCCAGCGATGGGAA 1700
|||||.||.|||.|.||.|||||....||.|.|||.||.||.|||||..|
BPUM_0787 1645 CATCTTGGCTTTTTAGGCGATAAAAAATTATTTTTCTCAAGTGATGGAGA 1694
BSNT_01402 1701 TGCACTGCTTCTGTTTGGG-AAAATCGCCAGAAGGCTG-GTC---GTGCT 1745
.||..||||||..|||||| ..|.|.||| |||| ||| |||||
BPUM_0787 1695 GGCGATGCTTCAATTTGGGCGCATTGGCC-----GCTGCGTCATTGTGCT 1739
BSNT_01402 1746 CGGCGATCCGTCTGGCCAAAGAGAATCATTCCCGCTCGTGCTGGAAGAAT 1795
|||.|||||.|||||.|..|.||.|||.|..||.||.|||||.|||||.|
BPUM_0787 1740 CGGAGATCCTTCTGGGCGTAAAGCATCCTATCCACTTGTGCTAGAAGAGT 1789
BSNT_01402 1796 TTCTGAACGAAGCGCATCAGAAGGGATTCAGTGTTTTG-------TTCTA 1838
||.| || |||..| ||||| .|..|||..|.|.| ||.||
BPUM_0787 1790 TTTT--AC--AGCAGA-CAGAA--AAAGCAGGCTATCGCGTCGCTTTTTA 1832
BSNT_01402 1839 TCAAATTGAACGAGAGGACATGGCGCTGTATCACGATTTTGGCTACAACT 1888
||||.|.|||||.||.|..||||||||.||.||.||.||.||||...|.|
BPUM_0787 1833 TCAAGTAGAACGGGAAGGGATGGCGCTCTACCATGACTTAGGCTTTCATT 1882
BSNT_01402 1889 TCTTTAAATTGGGCGAGGAAG-CATATGTAGATTTAAATACATTTACCTT 1937
|||||||..|.||.||.|||| ||| .||.||||||.|.||.||..|..|
BPUM_0787 1883 TCTTTAAGCTTGGAGAAGAAGCCAT-GGTCGATTTAGAAACGTTCTCTCT 1931
BSNT_01402 1938 GACTGGGAAGAAAAAAGC-------CGGCCTTCG-GGCAATCAATAACCG 1979
..|.||.|||||||||.| |||.|| | ||| ||||||
BPUM_0787 1932 CTCCGGTAAGAAAAAATCAAATTTACGGGCT--GTGGC---CAATAA--- 1973
BSNT_01402 1980 CTTTGAGCGGGAGGAGTATAC--TTTCCGTG-TGGATCATCCCCCATTTT 2026
.|||||.||.||.|..||||| ||..|.|| ||| |.||.||.||||
BPUM_0787 1974 GTTTGAACGAGAAGGCTATACGTTTGACATGCTGG---AACCGCCTTTTT 2020
BSNT_01402 2027 CTGATGCGTT--TTTGGAGGAGCTGAAGCAAATCTCAGACGAATGGCTCG 2074
|.||.|.||| |.|..| .|.|.||.||.||.||.||....|||||||
BPUM_0787 2021 CAGACGAGTTCATCTCAA--CGTTAAAACAGATTTCTGATAGCTGGCTCG 2068
BSNT_01402 2075 GCTCGAAAAAAGAGAAGGGATTCTCGCTCGGATTTTTT------GATCCT 2118
|...|||||||||.||.|||||.||||||||.|.|||| |||
BPUM_0787 2069 GAAAGAAAAAAGAAAAAGGATTTTCGCTCGGCTATTTTCAAGAAGAT--- 2115
BSNT_01402 2119 TCCTATTTACAGAAAGCGCCGATCGCCTAT-ATGAAAAATGCAGAAGGAG 2167
|||.|.||.|||||.||.||.| |.|| .||||..|||.|.||||.|
BPUM_0787 2116 ---TATCTTCAAAAAGCACCAATTG-CGATCCTGAAGGATGAACAAGGGG 2161
BSNT_01402 2168 AGATCGTTGCATTCGCAAATGTC----ATGCCGATGTACCAGGAAGGAGA 2213
|||||.||.|.||.| |||| |||||||||||.||.|||||.||
BPUM_0787 2162 AGATCATTTCTTTTG----TGTCACTTATGCCGATGTATCAAGAAGGGGA 2207
BSNT_01402 2214 GATATCGGTCGATCTGATGCG--CTATCGCGGC--GACGCTCCAAATGGC 2259
||||||..||||.|||||||| .||| || ||.||.||.||.||.
BPUM_0787 2208 GATATCCATCGACCTGATGCGTCATAT----GCATGATGCACCGAACGGG 2253
BSNT_01402 2260 ATTATGGACGCATTGTTTATCCGTATGTTTTT--ATGGGCAAAGGAAGAG 2307
||.|||||.||..||||||||| |..||||| ||||||.||.|||.|.
BPUM_0787 2254 ATGATGGATGCGCTGTTTATCC--ACCTTTTTCAATGGGCGAAAGAAAAA 2301
BSNT_01402 2308 GGCTGTACGTCATTTAATATGGGGATGGCACCCTTGGCCAATGTCGGCAC 2357
||||..|..||.|||||.|||||.|||||.||..|..|.|||||.||.|
BPUM_0787 2302 GGCTACAAATCCTTTAACATGGGAATGGCGCCTCTATCAAATGTAGGAA- 2350
BSNT_01402 2358 TGCCTTTACA----TCCTTCTGGTC---CGAAAGGTTTGCCG-CTGTCAT 2399
|.||.|| ||||| || ||.|..|||||.|| .|||.||
BPUM_0787 2351 ---CATTTCATCAGTCCTT----TCTCACGGAGCGTTTGGCGAGTGTTAT 2393
BSNT_01402 2400 TTTTAATAATGTCAGATACATGTACAGTTTCAGCGGCCTAAGAGCCTTTA 2449
|||.||.||.|||||||..||||||||.||||||||..||.|..|.||||
BPUM_0787 2394 TTTCAACAACGTCAGATTTATGTACAGCTTCAGCGGATTACGCTCGTTTA 2443
BSNT_01402 2450 AAGAAAAATATAAACCGGAGTGGCGAGGGAAATACTTAGCGTATCGGAAA 2499
||.|.|||||||||||.||.|||||.||.|||||.||||||||| |||
BPUM_0787 2444 AACAGAAATATAAACCTGAATGGCGCGGAAAATATTTAGCGTAT---AAA 2490
BSNT_01402 2500 AACAGAT--CTCTTT--CTGTCACCATGTTCCTCGTTA-CACGTCTGATT 2544
||.| || .||.|| |||||||.|||.|.||.||.| ||.| ||||||
BPUM_0787 2491 AAGA-ATACATCATTACCTGTCACAATGGTGCTTGTCACCAAG-CTGATT 2538
BSNT_01402 2545 GG--------CAAA-AGCAAAAAAGACTCCGTCTAA-- 2571
|| |||| .|||| .|..||||.|.
BPUM_0787 2539 GGGATGGACCCAAATCGCAA-----CCGGCGTCCATAG 2571
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