Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01393 and BPUM_0754

See Amino acid alignment / Visit BSNT_01393 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:58
# Commandline: needle
#    -asequence dna-align/BSNT_01393___yfiR.1.24716.seq
#    -bsequence dna-align/BPUM_0754.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01393___yfiR-BPUM_0754.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01393___yfiR-BPUM_0754.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01393___yfiR
# 2: BPUM_0754
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 761
# Identity:     356/761 (46.8%)
# Similarity:   356/761 (46.8%)
# Gaps:         319/761 (41.9%)
# Score: 606.5
# 
#
#=======================================

BSNT_01393___      1 TTGTCACCAAAAGTAACA--AAGGAGCA-CAAGGATAAACG---------     38
                       .|.| .||||||||.|  ||.||  | |||    |||||         
BPUM_0754          1 --ATGA-AAAAAGTAAAATTAATGA--ATCAA----AAACGTGTGCTTGA     41

BSNT_01393___     39 ----GCAGACAA----AGATTTTAGAGGCTGCCAAAACGGTTT---TTAA     77
                         ||.| |||    | .||||||        ||||.|||||   |||.
BPUM_0754         42 AGTAGCTG-CAACTTTA-TTTTTAG--------AAAAAGGTTTTGCTTAT     81

BSNT_01393___     78 ACGTA--AAGGATTCGAATTAACGACGATGAAGGACGTTGTA---GAAGA    122
                     || ||  |.||||  |||||           ||.||| ||||   .|||.
BPUM_0754         82 AC-TAGCATGGAT--GAATT-----------AGTACG-TGTAAGCAAAGT    116

BSNT_01393___    123 GTC-AGGTTTCAGCCGGGGCGGTGTCTATCTTTATTTTTCAAGCACTGAG    171
                     ||| |.||.|.|          |||.|||..|.|.|||||.|.||..|||
BPUM_0754        117 GTCAAAGTCTAA----------TGTGTATTATCACTTTTCTAACAAGGAG    156

BSNT_01393___    172 GAGATGTTTCGCCGCATTATT-GAAACAGGGCTGGATGA----AGGACTC    216
                     ||             |||||| ||   ||||.|.|.|||    .|||.| 
BPUM_0754        157 GA-------------ATTATTAGA---AGGGGTTGTTGATTATTGGATT-    189

BSNT_01393___    217 CGAAAGCTTG-ATAAATCAGC------TGA---AC---------ACCAA-    246
                      ||   |.|| ||.||||.||      |||   ||         ||||| 
BPUM_0754        190 -GA---CATGTATCAATCTGCCATTGATGACGTACTATCTCAGAACCAAT    235

BSNT_01393___    247 ----AGT--------GTTTGGTCCGCCA------TTTCAATCTATT----    274
                         |||        ||.|      |||      |||.||.|.|||    
BPUM_0754        236 TCTTAGTTGAAGAACGTAT------CCAACTATTTTTAAAGCAATTATCA    279

BSNT_01393___    275 --TGGA--TGAACTGTCTGAGGGCCTGCGTGATGTAGCAGATACGCTGGC    320
                       .|||  |.||   || |||.|.||              |||.|  ||.
BPUM_0754        280 CAAGGAGTTCAA---TC-GAGAGACT--------------ATAAG--GGG    309

BSNT_01393___    321 GCCGGTGCAATT-TGAATATT--TAGTGACAG--CTTGGCGGAATGAGGA    365
                     ..|.||.||.|| |.|.|.||  ||.|.|.||  ||              
BPUM_0754        310 AGCTGTCCATTTATTACTCTTTATATTCAAAGTCCT--------------    345

BSNT_01393___    366 ACGTAGGC------AGTATTTGGAGAAA-AGGTATGATCTTTTTGTGGAA    408
                     ||..||||      |.||...|.|.||| ||||.||.|||||      |.
BPUM_0754        346 ACACAGGCCACACAAATAAAAGAAAAAATAGGTCTGTTCTTT------AC    389

BSNT_01393___    409 AGATTTTCAAA----------TCTAT---TGCAAAAAGGGATCGATCAG-    444
                     ||..||.||||          |||||   ||.||.|||||.|.|| ||| 
BPUM_0754        390 AGGATTACAAAAGAAGATTACTCTATTACTGAAACAAGGGGTAGA-CAGT    438

BSNT_01393___    445 GGAGAGTTTC---AGCCGCTTCA-------------GCCTCTTGCGACTA    478
                     |||||.||.|   ||.||.||||             ||.||     ||| 
BPUM_0754        439 GGAGAATTCCGAAAGACGATTCATATTGATGAGGTGGCATC-----ACT-    482

BSNT_01393___    479 TCGCCAAGTTT-TTCCTCAATATGAATGACG--GCATCATTCAAAACGCC    525
                            |||| ||.| ||||.|   |||.|  ||||.|||         
BPUM_0754        483 -------GTTTATTAC-CAATCT---TGAAGGTGCATTATT---------    512

BSNT_01393___    526 CTGTATTTCGATGAAGAAA-----AAGCTGATGTATCTGGACTTGCTGAG    570
                        ||||||     |||||     |||  ||||   ||  ||      ||
BPUM_0754        513 ---TATTTC-----AGAAACATTGAAG--GATG---CT--AC------AG    541

BSNT_01393___    571 TC--TGC-AAAAC---------TATATTTAAAAACAGTT-CTGCAAGCGG    607
                     ||  |.| |||||         |||.||||     |.|| ||.|     |
BPUM_0754        542 TCATTACGAAAACAGCCGATCATATGTTTA-----ACTTGCTTC-----G    581

BSNT_01393___    608 ATGAGAAGTAA    618
                     ||.|       
BPUM_0754        582 ATAA-------    585


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