Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01338 and BPUM_0753
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:56
# Commandline: needle
# -asequence dna-align/BSNT_01338___yfjO.1.24716.seq
# -bsequence dna-align/BPUM_0753___trmA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01338___yfjO-BPUM_0753___trmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01338___yfjO-BPUM_0753___trmA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01338___yfjO
# 2: BPUM_0753___trmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1430
# Identity: 1035/1430 (72.4%)
# Similarity: 1035/1430 (72.4%)
# Gaps: 73/1430 ( 5.1%)
# Score: 3622.5
#
#
#=======================================
BSNT_01338___ 1 GTGAACCAACAAAAGAAACAGGCGCCCGTCGAACTG---AAGGTCGGACA 47
|||||..||.|..||.| |||.||||.| .|| ||| |||||
BPUM_0753___t 1 GTGAAGGAAAATCAGCA--AGGTGCCCTT----TTGCAAAAG---GGACA 41
BSNT_01338___ 48 AACCTTTCCGCTGACGATTAAGCGTCTCGGCATTAACGGAGAAGGTGTCG 97
....||.|||||.||.|||||.||.||.||||||||.||.|||||.||||
BPUM_0753___t 42 GCAGTTCCCGCTTACCATTAAACGCCTTGGCATTAATGGGGAAGGGGTCG 91
BSNT_01338___ 98 GCTATTTTAAGAAAAAAGTCGTCTTCGTGCCCGGCGCGCTTCCTGGCGAA 147
|.||||||||.||..||||.|||||.||.||.||.||||||||.||.|||
BPUM_0753___t 92 GTTATTTTAAAAAGCAAGTGGTCTTTGTCCCAGGTGCGCTTCCAGGTGAA 141
BSNT_01338___ 148 GAAGTTGTTGTGCAGGCCACAAAGGTCCAGCCGAAGTTTTCGGAGGG--C 195
|||||.||||||.|.||.||.||.|||||..|.||.|.|.|.||.|| |
BPUM_0753___t 142 GAAGTGGTTGTGGAAGCAACGAATGTCCAAGCAAAATATGCAGAAGGTAC 191
BSNT_01338___ 196 CGCATTAAGAAAATCCGCAAGGCG-TCTGAGCACCGGGTGGCACCGCCTT 244
.| |||.||||.|..| ||.||| ||.|||||.||.||...||||||.|
BPUM_0753___t 192 GG--TTAGGAAAGTTAG-AAAGCGCTCCGAGCATCGAGTAAAACCGCCAT 238
BSNT_01338___ 245 GCCCTGTTTATGAGCAATGCGGCGGCTGCCAGCTTCAGCACCTTGCATAC 294
||||.||.||.||..|.|||||||||||.|||||||||||..|.||.|||
BPUM_0753___t 239 GCCCAGTATACGAAGAGTGCGGCGGCTGTCAGCTTCAGCATTTGGCGTAC 288
BSNT_01338___ 295 -AGCCAGCAGCTTCGGGAAAAACGCGATATCGTCATTCAGTCTCTTGAAC 343
|| ||||||||..||||||||||.|||||.||||||||.||..|.||||
BPUM_0753___t 289 GAG-CAGCAGCTAAGGGAAAAACGAGATATTGTCATTCAATCAATGGAAC 337
BSNT_01338___ 344 GCCATACGAAGTTTAAAGTTGAAAACATGGAAATCAAAGAAACGATTGGC 393
|.|||||||||.|...|||||||||..||||.||||....|||||||||.
BPUM_0753___t 338 GACATACGAAGCTATCAGTTGAAAAGCTGGATATCAGGCCAACGATTGGT 387
BSNT_01338___ 394 ATGGACAACCCGTGGAATTACCGCAATAAAAGCCAATTCCAGATCGGACG 443
|||||..|.||||||.|.|||||.||||||||.||.|||||..|.||.||
BPUM_0753___t 388 ATGGAAGATCCGTGGCACTACCGGAATAAAAGTCAGTTCCAAGTAGGGCG 437
BSNT_01338___ 444 CTCGCAAAGTGG-GAGCATCATCGCCGGCTTATACGGCCTTGATTCTCAT 492
.||.||.||.|| || ||||||.||.||..|||||||.||..|.||||||
BPUM_0753___t 438 TTCTCACAGCGGTGA-CATCATTGCGGGGCTATACGGACTGAACTCTCAT 486
BSNT_01338___ 493 GATATCGTGCCGATTAAAGACTGTATCGTTCAGCATCCGGCAACGAACAA 542
.|..|.||.|||||.||.||.||||||||.||||||||...|||.|||||
BPUM_0753___t 487 AAGCTTGTACCGATCAAGGAATGTATCGTGCAGCATCCAAAAACAAACAA 536
BSNT_01338___ 543 AACAACAGGCATCGTCCGCCGCATTTTAGAGGACTTCAATGTGTCTGTTT 592
||||||.|||.|.||||||...|||||||||.|.|||..|||.||.||.|
BPUM_0753___t 537 AACAACGGGCGTTGTCCGCAAAATTTTAGAGAAATTCGGTGTATCGGTCT 586
BSNT_01338___ 593 ATAATGAAAGAAAACGAAAAGGCGACGTTCGCACGATC----GTGACGAG 638
|.||||||.|.|...||||||||||||| |||||| ||...|.|
BPUM_0753___t 587 ACAATGAACGGACGAGAAAAGGCGACGT----ACGATCAATTGTTGTGCG 632
BSNT_01338___ 639 AGTCGGCTTTGAAACAGGCGAAGTGCAGGTCGTGCTTGTAACTGCAAAA- 687
.|||||||||||||||||.|||||.||||||||.||.||.||..|||||
BPUM_0753___t 633 TGTCGGCTTTGAAACAGGTGAAGTACAGGTCGTTCTAGTCACATCAAAAC 682
BSNT_01338___ 688 --GAAACGCTTCCGCACAAGGAAGAAATCGTCAAAGCGATTCAAAAGCGA 735
||| .||||..|.||..|||||||||.|.|.||.||||||||.||.
BPUM_0753___t 683 CTGAA---TTTCCAAAGAAAAAAGAAATCGCCGACGCCATTCAAAAACGT 729
BSNT_01338___ 736 TTGCCAGAGGTCAAATCCATTATTCAGAATGTAAACGGGGCGAAAACCTC 785
.|||||||.||.|..||||||||.||.||..|.||.||.|..|||||.||
BPUM_0753___t 730 CTGCCAGAAGTGACGTCCATTATGCACAACATCAATGGTGAAAAAACGTC 779
BSNT_01338___ 786 AGTGATTTTTGGTGAGAAAACAAAACAGCTCGCCGGAAAAACAGTGATTC 835
.||.|||||||||.|.||.|||...||.||.||.||.||.|..||.||.|
BPUM_0753___t 780 GGTCATTTTTGGTCATAAGACATCTCACCTGGCTGGCAACATGGTTATCC 829
BSNT_01338___ 836 AAGAAGTGCTCGGCGACGTATCTTTTGAATTGAGCGCCCGCGCTTTCTTC 885
|||||.|..|.||.||.||.||.||.|||.||||.||.||.|||||||||
BPUM_0753___t 830 AAGAATTTTTAGGAGATGTCTCCTTCGAACTGAGTGCACGTGCTTTCTTC 879
BSNT_01338___ 886 CAGCTCAATCCGGAACAGACCGTCAAGCTGTATGATGAAGTGAAAAAAGC 935
||..|.||||||.|.||.||..|.|||||.||.||.||||.|||||||||
BPUM_0753___t 880 CAATTGAATCCGAAGCAAACGCTAAAGCTTTACGACGAAGCGAAAAAAGC 929
BSNT_01338___ 936 GGCGCAGCTGACCGGAAAAGAAAAAGTCGTTGATGCGTATTGCGGCGTCG 985
|||..|.|||||.||.|||||||||||.||.|||||||||||||||||.|
BPUM_0753___t 930 GGCAAAACTGACTGGCAAAGAAAAAGTTGTCGATGCGTATTGCGGCGTTG 979
BSNT_01338___ 986 GCACTATCGGCATGTGGGTTGCGGACGGAGCGAAGGAAGTCCGCGGCATG 1035
|.||.||.||.||||||.||.|.||.||.||.||.|||||..|.||.|||
BPUM_0753___t 980 GAACGATTGGGATGTGGCTTTCAGATGGTGCCAAAGAAGTAAGAGGAATG 1029
BSNT_01338___ 1036 GACGTCATCAAGGAATCAATTGACGATGCCAAGAAAAACGCCAAAAAACA 1085
||.||||||||.|||||.||.||.||||||||||||||.||.||||||||
BPUM_0753___t 1030 GATGTCATCAAAGAATCGATAGATGATGCCAAGAAAAATGCTAAAAAACA 1079
BSNT_01338___ 1086 CGGCATGGCAAATGCCACATACGTAACAGGAACAGCCGAGCACTGGCTCC 1135
|||||||..|||.||.||.||.||.|||||||||||.||.||.|||||.|
BPUM_0753___t 1080 CGGCATGAAAAACGCGACCTATGTGACAGGAACAGCGGAACATTGGCTGC 1129
BSNT_01338___ 1136 CGAAATGGACGAAAGAAGGCTTCCGCCCGGACGTCGTCATTGTAGACCCG 1185
|.||||||...||||||||||||||.||.||.|||.||.|.||.||||||
BPUM_0753___t 1130 CAAAATGGGTCAAAGAAGGCTTCCGTCCTGATGTCATCGTCGTCGACCCG 1179
BSNT_01338___ 1186 CCAAGAACGGGCTGTGACAGCACGTTCTTGGACACGATCAAAAAAGTCAA 1235
||||||||.|||||.||..||||.|||||.||||||.|||||.|||||||
BPUM_0753___t 1180 CCAAGAACAGGCTGCGAGCGCACCTTCTTAGACACGGTCAAACAAGTCAA 1229
BSNT_01338___ 1236 ACCGAAACGCTTTGTCTACGTTTCCTGCAATCCATCCACGCTTGCGAAGG 1285
|||.|||||..||||||||||.||.|||||.|||||.||.||.||.||.|
BPUM_0753___t 1230 ACCAAAACGTCTTGTCTACGTCTCTTGCAACCCATCAACACTAGCAAAAG 1279
BSNT_01338___ 1286 A-TTTGCAGACGCTGTCGAAGGACT-----ATCGCGTGGACTATATTCAG 1329
| .|.|.|.|| .|.||.||.|||| ||| ||.||.||.|||
BPUM_0753___t 1280 ACCTAGAATAC-ATCTCAAAAGACTACAAAATC-----GAATACATGCAG 1323
BSNT_01338___ 1330 CCTGTCGATATGTTTCCGCAGACGGCGCATGTTGAAGCAGTGGCGAGAC- 1378
||.|||||||||||.|||||.||....||||| .|||||
BPUM_0753___t 1324 CCAGTCGATATGTTCCCGCATACTAGTCATGT-----------GGAGACG 1362
BSNT_01338___ 1379 -TTGTAT------TGAAATCGTCTAACTAA 1401
|||||| ||||| ||.||.
BPUM_0753___t 1363 GTTGTATCACTTGTGAAA------AAATAG 1386
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