Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01338 and BPUM_0753

See Amino acid alignment / Visit BSNT_01338 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:56
# Commandline: needle
#    -asequence dna-align/BSNT_01338___yfjO.1.24716.seq
#    -bsequence dna-align/BPUM_0753___trmA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01338___yfjO-BPUM_0753___trmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01338___yfjO-BPUM_0753___trmA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01338___yfjO
# 2: BPUM_0753___trmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1430
# Identity:    1035/1430 (72.4%)
# Similarity:  1035/1430 (72.4%)
# Gaps:          73/1430 ( 5.1%)
# Score: 3622.5
# 
#
#=======================================

BSNT_01338___      1 GTGAACCAACAAAAGAAACAGGCGCCCGTCGAACTG---AAGGTCGGACA     47
                     |||||..||.|..||.|  |||.||||.|    .||   |||   |||||
BPUM_0753___t      1 GTGAAGGAAAATCAGCA--AGGTGCCCTT----TTGCAAAAG---GGACA     41

BSNT_01338___     48 AACCTTTCCGCTGACGATTAAGCGTCTCGGCATTAACGGAGAAGGTGTCG     97
                     ....||.|||||.||.|||||.||.||.||||||||.||.|||||.||||
BPUM_0753___t     42 GCAGTTCCCGCTTACCATTAAACGCCTTGGCATTAATGGGGAAGGGGTCG     91

BSNT_01338___     98 GCTATTTTAAGAAAAAAGTCGTCTTCGTGCCCGGCGCGCTTCCTGGCGAA    147
                     |.||||||||.||..||||.|||||.||.||.||.||||||||.||.|||
BPUM_0753___t     92 GTTATTTTAAAAAGCAAGTGGTCTTTGTCCCAGGTGCGCTTCCAGGTGAA    141

BSNT_01338___    148 GAAGTTGTTGTGCAGGCCACAAAGGTCCAGCCGAAGTTTTCGGAGGG--C    195
                     |||||.||||||.|.||.||.||.|||||..|.||.|.|.|.||.||  |
BPUM_0753___t    142 GAAGTGGTTGTGGAAGCAACGAATGTCCAAGCAAAATATGCAGAAGGTAC    191

BSNT_01338___    196 CGCATTAAGAAAATCCGCAAGGCG-TCTGAGCACCGGGTGGCACCGCCTT    244
                     .|  |||.||||.|..| ||.||| ||.|||||.||.||...||||||.|
BPUM_0753___t    192 GG--TTAGGAAAGTTAG-AAAGCGCTCCGAGCATCGAGTAAAACCGCCAT    238

BSNT_01338___    245 GCCCTGTTTATGAGCAATGCGGCGGCTGCCAGCTTCAGCACCTTGCATAC    294
                     ||||.||.||.||..|.|||||||||||.|||||||||||..|.||.|||
BPUM_0753___t    239 GCCCAGTATACGAAGAGTGCGGCGGCTGTCAGCTTCAGCATTTGGCGTAC    288

BSNT_01338___    295 -AGCCAGCAGCTTCGGGAAAAACGCGATATCGTCATTCAGTCTCTTGAAC    343
                      || ||||||||..||||||||||.|||||.||||||||.||..|.||||
BPUM_0753___t    289 GAG-CAGCAGCTAAGGGAAAAACGAGATATTGTCATTCAATCAATGGAAC    337

BSNT_01338___    344 GCCATACGAAGTTTAAAGTTGAAAACATGGAAATCAAAGAAACGATTGGC    393
                     |.|||||||||.|...|||||||||..||||.||||....|||||||||.
BPUM_0753___t    338 GACATACGAAGCTATCAGTTGAAAAGCTGGATATCAGGCCAACGATTGGT    387

BSNT_01338___    394 ATGGACAACCCGTGGAATTACCGCAATAAAAGCCAATTCCAGATCGGACG    443
                     |||||..|.||||||.|.|||||.||||||||.||.|||||..|.||.||
BPUM_0753___t    388 ATGGAAGATCCGTGGCACTACCGGAATAAAAGTCAGTTCCAAGTAGGGCG    437

BSNT_01338___    444 CTCGCAAAGTGG-GAGCATCATCGCCGGCTTATACGGCCTTGATTCTCAT    492
                     .||.||.||.|| || ||||||.||.||..|||||||.||..|.||||||
BPUM_0753___t    438 TTCTCACAGCGGTGA-CATCATTGCGGGGCTATACGGACTGAACTCTCAT    486

BSNT_01338___    493 GATATCGTGCCGATTAAAGACTGTATCGTTCAGCATCCGGCAACGAACAA    542
                     .|..|.||.|||||.||.||.||||||||.||||||||...|||.|||||
BPUM_0753___t    487 AAGCTTGTACCGATCAAGGAATGTATCGTGCAGCATCCAAAAACAAACAA    536

BSNT_01338___    543 AACAACAGGCATCGTCCGCCGCATTTTAGAGGACTTCAATGTGTCTGTTT    592
                     ||||||.|||.|.||||||...|||||||||.|.|||..|||.||.||.|
BPUM_0753___t    537 AACAACGGGCGTTGTCCGCAAAATTTTAGAGAAATTCGGTGTATCGGTCT    586

BSNT_01338___    593 ATAATGAAAGAAAACGAAAAGGCGACGTTCGCACGATC----GTGACGAG    638
                     |.||||||.|.|...|||||||||||||    ||||||    ||...|.|
BPUM_0753___t    587 ACAATGAACGGACGAGAAAAGGCGACGT----ACGATCAATTGTTGTGCG    632

BSNT_01338___    639 AGTCGGCTTTGAAACAGGCGAAGTGCAGGTCGTGCTTGTAACTGCAAAA-    687
                     .|||||||||||||||||.|||||.||||||||.||.||.||..||||| 
BPUM_0753___t    633 TGTCGGCTTTGAAACAGGTGAAGTACAGGTCGTTCTAGTCACATCAAAAC    682

BSNT_01338___    688 --GAAACGCTTCCGCACAAGGAAGAAATCGTCAAAGCGATTCAAAAGCGA    735
                       |||   .||||..|.||..|||||||||.|.|.||.||||||||.||.
BPUM_0753___t    683 CTGAA---TTTCCAAAGAAAAAAGAAATCGCCGACGCCATTCAAAAACGT    729

BSNT_01338___    736 TTGCCAGAGGTCAAATCCATTATTCAGAATGTAAACGGGGCGAAAACCTC    785
                     .|||||||.||.|..||||||||.||.||..|.||.||.|..|||||.||
BPUM_0753___t    730 CTGCCAGAAGTGACGTCCATTATGCACAACATCAATGGTGAAAAAACGTC    779

BSNT_01338___    786 AGTGATTTTTGGTGAGAAAACAAAACAGCTCGCCGGAAAAACAGTGATTC    835
                     .||.|||||||||.|.||.|||...||.||.||.||.||.|..||.||.|
BPUM_0753___t    780 GGTCATTTTTGGTCATAAGACATCTCACCTGGCTGGCAACATGGTTATCC    829

BSNT_01338___    836 AAGAAGTGCTCGGCGACGTATCTTTTGAATTGAGCGCCCGCGCTTTCTTC    885
                     |||||.|..|.||.||.||.||.||.|||.||||.||.||.|||||||||
BPUM_0753___t    830 AAGAATTTTTAGGAGATGTCTCCTTCGAACTGAGTGCACGTGCTTTCTTC    879

BSNT_01338___    886 CAGCTCAATCCGGAACAGACCGTCAAGCTGTATGATGAAGTGAAAAAAGC    935
                     ||..|.||||||.|.||.||..|.|||||.||.||.||||.|||||||||
BPUM_0753___t    880 CAATTGAATCCGAAGCAAACGCTAAAGCTTTACGACGAAGCGAAAAAAGC    929

BSNT_01338___    936 GGCGCAGCTGACCGGAAAAGAAAAAGTCGTTGATGCGTATTGCGGCGTCG    985
                     |||..|.|||||.||.|||||||||||.||.|||||||||||||||||.|
BPUM_0753___t    930 GGCAAAACTGACTGGCAAAGAAAAAGTTGTCGATGCGTATTGCGGCGTTG    979

BSNT_01338___    986 GCACTATCGGCATGTGGGTTGCGGACGGAGCGAAGGAAGTCCGCGGCATG   1035
                     |.||.||.||.||||||.||.|.||.||.||.||.|||||..|.||.|||
BPUM_0753___t    980 GAACGATTGGGATGTGGCTTTCAGATGGTGCCAAAGAAGTAAGAGGAATG   1029

BSNT_01338___   1036 GACGTCATCAAGGAATCAATTGACGATGCCAAGAAAAACGCCAAAAAACA   1085
                     ||.||||||||.|||||.||.||.||||||||||||||.||.||||||||
BPUM_0753___t   1030 GATGTCATCAAAGAATCGATAGATGATGCCAAGAAAAATGCTAAAAAACA   1079

BSNT_01338___   1086 CGGCATGGCAAATGCCACATACGTAACAGGAACAGCCGAGCACTGGCTCC   1135
                     |||||||..|||.||.||.||.||.|||||||||||.||.||.|||||.|
BPUM_0753___t   1080 CGGCATGAAAAACGCGACCTATGTGACAGGAACAGCGGAACATTGGCTGC   1129

BSNT_01338___   1136 CGAAATGGACGAAAGAAGGCTTCCGCCCGGACGTCGTCATTGTAGACCCG   1185
                     |.||||||...||||||||||||||.||.||.|||.||.|.||.||||||
BPUM_0753___t   1130 CAAAATGGGTCAAAGAAGGCTTCCGTCCTGATGTCATCGTCGTCGACCCG   1179

BSNT_01338___   1186 CCAAGAACGGGCTGTGACAGCACGTTCTTGGACACGATCAAAAAAGTCAA   1235
                     ||||||||.|||||.||..||||.|||||.||||||.|||||.|||||||
BPUM_0753___t   1180 CCAAGAACAGGCTGCGAGCGCACCTTCTTAGACACGGTCAAACAAGTCAA   1229

BSNT_01338___   1236 ACCGAAACGCTTTGTCTACGTTTCCTGCAATCCATCCACGCTTGCGAAGG   1285
                     |||.|||||..||||||||||.||.|||||.|||||.||.||.||.||.|
BPUM_0753___t   1230 ACCAAAACGTCTTGTCTACGTCTCTTGCAACCCATCAACACTAGCAAAAG   1279

BSNT_01338___   1286 A-TTTGCAGACGCTGTCGAAGGACT-----ATCGCGTGGACTATATTCAG   1329
                     | .|.|.|.|| .|.||.||.||||     |||     ||.||.||.|||
BPUM_0753___t   1280 ACCTAGAATAC-ATCTCAAAAGACTACAAAATC-----GAATACATGCAG   1323

BSNT_01338___   1330 CCTGTCGATATGTTTCCGCAGACGGCGCATGTTGAAGCAGTGGCGAGAC-   1378
                     ||.|||||||||||.|||||.||....|||||           .||||| 
BPUM_0753___t   1324 CCAGTCGATATGTTCCCGCATACTAGTCATGT-----------GGAGACG   1362

BSNT_01338___   1379 -TTGTAT------TGAAATCGTCTAACTAA   1401
                      ||||||      |||||      ||.||.
BPUM_0753___t   1363 GTTGTATCACTTGTGAAA------AAATAG   1386


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