Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05998 and BPUM_0749
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:32
# Commandline: needle
# -asequence dna-align/BSNT_05998___yxiI.1.24716.seq
# -bsequence dna-align/BPUM_0749.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05998___yxiI-BPUM_0749.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05998___yxiI-BPUM_0749.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05998___yxiI
# 2: BPUM_0749
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 591
# Identity: 303/591 (51.3%)
# Similarity: 303/591 (51.3%)
# Gaps: 201/591 (34.0%)
# Score: 640.5
#
#
#=======================================
BSNT_05998___ 1 ATGATGAATTGGCGCGCTTTAAGTCAGACAAAACAAGACCGCA---TCTG 47
|||| |||||..||...|| |||.
BPUM_0749 1 ---ATGA----------------------AAAACTGGATTCCATTGTCTC 25
BSNT_05998___ 48 GTCAGAAGTGAAC--AAGCTCATAAAATGGAAGCC-------CGGAAG-- 86
.||| .|||| |||||| ..||||.||.| || ||
BPUM_0749 26 ATCA----AGAACGAAAGCTC---GCATGGGAGACGCTCTATCG--AGAT 66
BSNT_05998___ 87 --CAGATGTCATCACATCATCCCGCCTGATC---CATATCGAGTGTTTGA 131
||.||.|||||..|.||||.|.|.|..|| |||.|||.||...|
BPUM_0749 67 TTCAAATTTCATCCGAGCATCTCTCGTTTTCCCTCATTTCGCGTACCT-- 114
BSNT_05998___ 132 TATCTCAAGCGCGATGAGCAGTAAAGCTGGTCATAATGATGTGAGCGGAG 181
|||| |..| ||.|| ||| ||||| |.
BPUM_0749 115 --TCTC-----CTTT---CATTA--------CAT-ATGAT--------AT 137
BSNT_05998___ 182 TGCTAAG-TGATTTAGAG---ACTTCTATTTTA----------------- 210
|.|| | |.||||.||| .|||||.||.||
BPUM_0749 138 TTCT--GCTTATTTTGAGGACCCTTCTCTTCTACATGCAGATGAAGGCCT 185
BSNT_05998___ 211 -------AAAGCATTTCAATT-------AGGTACT-----GGAAAGAACG 241
|||||||| |.|| |||..|| |.|.|| |||
BPUM_0749 186 TGAAAAGAAAGCATT--ACTTGTTTTTCAGGAGCTTATCAGAACAG-ACG 232
BSNT_05998___ 242 ATGTA-ATGTACGCACTAGATTGGCAGCATGA-------CGGAT-ATACC 282
| ||| |||...|||||.|||||||||||.|| .|||| |.|||
BPUM_0749 233 A-GTATATGCTGGCACTTGATTGGCAGCACGAATGCTACTGGATCACACC 281
BSNT_05998___ 283 TTTAGTCCTCATCAGGCAATGCCTAAGGATGAATTTGGCGAATGGCCTGT 332
.||....||||..| || ||.||||||||.||.||||||.|.||
BPUM_0749 282 -ATACGGATCATTTG--AA-----AAAGATGAATTCGGAGAATGGACAGT 323
BSNT_05998___ 333 TCCCGTATTTCCAAATGGAGACTATTATTTCTTTTT-TCATCAG-GACTT 380
.||.||..||||.||.|||||.|||||||||||||| |||..|| ||
BPUM_0749 324 ACCTGTGCTTCCGAACGGAGATTATTATTTCTTTTTATCAAAAGAGA--- 370
BSNT_05998___ 381 CTCC--TGGGGACTT-TTGGGAGACCCGTGGAAATTGA-CA----ATCAC 422
|.| ||||| ||| .|.|||.|.||.||| || || |||||
BPUM_0749 371 -TGCATTGGGG-CTTGCTAGGACATCCTTGG-----GAGCAAAGCATCAC 413
BSNT_05998___ 423 TGTGTTTGGTGAAGAGCTGTTGGAGGCGATAGA------------TCATG 460
..|.||.|||| ||.||| .|||.|| ||||.
BPUM_0749 414 GATATTCGGTG-AGGGCT--------TGATTGACTCTTTCTCGCGTCATC 454
BSNT_05998___ 461 ATCCGCCTATCCTGTTTC-----AAAATA-------GATGA 489
||||| ||..|||||| |||||| |||.|
BPUM_0749 455 ATCCG---ATTTTGTTTCAACGTAAAATAAGGGAAGGATAA 492
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