Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01332 and BPUM_0748

See Amino acid alignment / Visit BSNT_01332 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:55
# Commandline: needle
#    -asequence dna-align/BSNT_01332___yfjS.1.24716.seq
#    -bsequence dna-align/BPUM_0748___yfjS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01332___yfjS-BPUM_0748___yfjS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01332___yfjS-BPUM_0748___yfjS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01332___yfjS
# 2: BPUM_0748___yfjS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 834
# Identity:     588/834 (70.5%)
# Similarity:   588/834 (70.5%)
# Gaps:          84/834 (10.1%)
# Score: 2004.5
# 
#
#=======================================

BSNT_01332___      1 ATGAA---------GTGGATGTGTTCAATATGCTGCGCCGCCGTATTG--     39
                     |||||         |...||.||||   |||| ||||    |.|.|||  
BPUM_0748___y      1 ATGAAAAAAACCATGCTCATCTGTT---TATG-TGCG----CTTTTTGTA     42

BSNT_01332___     40 --CTTGCCGGAGGTGCAGCACAGGCGGAAGCGGTGCCGAATGAGCCGATT     87
                       |.||||     |....||.|.||||||||.|||.|.|||.||||..||
BPUM_0748___y     43 TCCATGCC-----TCTCTCAGAAGCGGAAGCCGTGTCTAATCAGCCTGTT     87

BSNT_01332___     88 AATTGGGGCTTTAAACGAAGTGTCA--ATCATCAGCCGCCAGATGCCGGG    135
                     .|||||||.|||  .||||..||.|  |.||||||||..|||||||.||.
BPUM_0748___y     88 CATTGGGGATTT--GCGAAAAGTAAAGAACATCAGCCAGCAGATGCGGGT    135

BSNT_01332___    136 AAGCAGCTGAACAG----TTTAATTGAAAAATATGACGCGTTTTATTTAG    181
                     ||..|.|||||| |    |||||   ||||.|||||.||.||.|||||||
BPUM_0748___y    136 AAAGAACTGAAC-GCCCTTTTAA---AAAAGTATGATGCCTTCTATTTAG    181

BSNT_01332___    182 GGAATAC--AAAGGAAAAAACGATTTACTTAACGTTTGATAACGGATATG    229
                     |.||.||  |||.||||.|  |||.||.||.||.||.||||||||.||||
BPUM_0748___y    182 GAAACACGAAAAAGAAAGA--GATCTATTTTACATTCGATAACGGCTATG    229

BSNT_01332___    230 AAAATGGCTATACGCCAAAAGTGCTT-GATGTCTTAAAAAAACATCGCGT    278
                     |||||||.||.|||||.|||.| ||| |||||..|.||||||||||..||
BPUM_0748___y    230 AAAATGGGTACACGCCGAAAAT-CTTAGATGTGCTGAAAAAACATCAAGT    278

BSNT_01332___    279 AACAGGAACGTTTTTTGTCACCGGGCATTTCGTAAAGGACCAGCCTCAGC    328
                     ..||||.||.||.|||||.||.||.||.||.||||||||.|||||..|||
BPUM_0748___y    279 GCCAGGCACCTTCTTTGTGACAGGACACTTTGTAAAGGATCAGCCGGAGC    328

BSNT_01332___    329 TGATCAAACGAATGTCAGATGAGGGCCATATTATCGGCAACCATTCCTTT    378
                     |..|||||||.|||.||||.||.||.|||||.||||||||||||||.|.|
BPUM_0748___y    329 TCGTCAAACGTATGGCAGAGGAAGGTCATATCATCGGCAACCATTCTTAT    378

BSNT_01332___    379 CACCATCCGGATTTAACGACAAAAACAGCTGATCAGATTCAGGATGAACT    428
                     ||||||||.|||.||||.||||            |||.|..|.|.|||.|
BPUM_0748___y    379 CACCATCCAGATCTAACAACAA------------AGAGTACGAAAGAAAT    416

BSNT_01332___    429 --------AGATTCA----GTCAACGAAGAGGTTTATAAAATTACGGGAA    466
                             ||.||||    |||.|.||||..||.||.|||||.||.||||
BPUM_0748___y    417 CAAAGAAGAGCTTCAGCGTGTCGATGAAGCCGTGTACAAAATCACTGGAA    466

BSNT_01332___    467 AGCAGGACAATCTGTA-CTTGCGTCCGCCGCGTGGCGTGTTCAGTGAGTA    515
                     |.||.|||||.||.|| ||| |||||||||||.||.||.||||||||...
BPUM_0748___y    467 AACAAGACAACCTCTATCTT-CGTCCGCCGCGCGGTGTATTCAGTGAAAG    515

BSNT_01332___    516 CGTACTGAAAGAAACGAAACGCCTCGGCTATCAAACCGTTTTCTGGTCGG    565
                     .||.|||||||||||.|||...||||||||.|||||||||||||||||.|
BPUM_0748___y    516 AGTGCTGAAAGAAACAAAAGAGCTCGGCTACCAAACCGTTTTCTGGTCAG    565

BSNT_01332___    566 TCGCTTTTGTTGATTGG-AAAATCAACAACCAAAAGGGGAAGA-AATATG    613
                     |.||.|||||.||.||| |.|.|||.||.|.||||  ||||.| |.||||
BPUM_0748___y    566 TGGCATTTGTGGACTGGCATATTCATCATCAAAAA--GGAAAACAGTATG    613

BSNT_01332___    614 CCTACGATCATATGATTAAGCAGGCGCACCCGGGAGCCATTTACCTGCTG    663
                     |.||||||||.|||||.||||||||||||||.||.|||||||||.|.||.
BPUM_0748___y    614 CTTACGATCAAATGATGAAGCAGGCGCACCCAGGTGCCATTTACTTACTT    663

BSNT_01332___    664 CACACCGTATCAAGGGACAATGCTGAAGCACTGGATGATGCGATTACAGA    713
                     ||.|||||.|||||.||||||||.||.|||.||||||||||.||.||.|.
BPUM_0748___y    664 CATACCGTCTCAAGAGACAATGCCGAGGCATTGGATGATGCCATCACGGC    713

BSNT_01332___    714 TCTGAAAAAACAGGGCTACACTTTTAAAAGCATTGATGATCTGATGTTTG    763
                     .|||||||||||.||.||..|.|||||||||.|.||.|||||.|||.|||
BPUM_0748___y    714 ACTGAAAAAACAAGGTTATTCCTTTAAAAGCCTAGACGATCTCATGCTTG    763

BSNT_01332___    764 AGAAAGAAATGAAGATGCCGTC--CTTGTAA---    792
                     |.||||.|..|.|..|||| ||  ||    |   
BPUM_0748___y    764 AAAAAGTATGGCATCTGCC-TCAGCT----ATAG    792


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01332 and BPUM_0748

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
