Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01327 and BPUM_0742

See Amino acid alignment / Visit BSNT_01327 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:55
# Commandline: needle
#    -asequence dna-align/BSNT_01327___yfkD.1.24716.seq
#    -bsequence dna-align/BPUM_0742___yfkD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01327___yfkD-BPUM_0742___yfkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01327___yfkD-BPUM_0742___yfkD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01327___yfkD
# 2: BPUM_0742___yfkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 839
# Identity:     582/839 (69.4%)
# Similarity:   582/839 (69.4%)
# Gaps:         100/839 (11.9%)
# Score: 2015.0
# 
#
#=======================================

BSNT_01327___      1 ATGATGAAAAAGCTATTTCATTCCACACTTATCGTGT---------TGTT     41
                        |||||||||       ||.||.|.|  |||.|||         |.||
BPUM_0742___y      1 ---ATGAAAAAG-------ATGCCCCGC--ATCATGTTTGTTGTTCTCTT     38

BSNT_01327___     42 ATTCTTTAGTTTT---TTCGGCGTT-CAGCCCATCCACGCGAAAAAGCAG     87
                     ||.|||.||||||   |.|.||.|| ||||    ..|.|||...||||..
BPUM_0742___y     39 ATCCTTAAGTTTTCTATACAGCTTTCCAGC----GGAGGCGGCGAAGCCA     84

BSNT_01327___     88 TTTAAGGTTCCTAAT--TCTGTCGCAAGCATTTCAAAGGAAAACACGTAT    135
                     ||||||||.||  ||  ||||||||.||.||.||.|||||.||.||||||
BPUM_0742___y     85 TTTAAGGTGCC--ATCGTCTGTCGCCAGTATCTCCAAGGAGAATACGTAT    132

BSNT_01327___    136 CCGAATGCTTCGCAGGATCAGCCAATGCTTCAGCCGAGCAAGCTGGCAAA    185
                     |||||.||.||.|||||||||||..||||.|||||||||.|||||.||..
BPUM_0742___y    133 CCGAACGCGTCACAGGATCAGCCCCTGCTCCAGCCGAGCGAGCTGACAGC    182

BSNT_01327___    186 GGAATTGCTCGATCATT--------CTGAGGTGAAGATTGAAAATCCGCA    227
                     .||||||        ||        |.||.|||..||||||.|||.|.||
BPUM_0742___y    183 CGAATTG--------TTTAAAACAACGGATGTGCCGATTGAGAATACCCA    224

BSNT_01327___    228 TCTCATCAAAATGCTGAATGAATCCAACATATCCGGCACACCGCTTGCAG    277
                     |.|.||||||||||||||||||||||.|||.||.||.||.||..|.||.|
BPUM_0742___y    225 TTTGATCAAAATGCTGAATGAATCCAGCATTTCAGGGACGCCATTAGCTG    274

BSNT_01327___    278 TAGGGTACCGGGCGACAATATTTCTCGGGAAATGGGCGCTCGGCTATGAA    327
                     |.||.|||||.|||||.||.||.||.||.|.||||||.||..||||.||.
BPUM_0742___y    275 TTGGTTACCGCGCGACTATTTTCCTTGGAAGATGGGCACTGAGCTACGAT    324

BSNT_01327___    328 TCAAATGAAACAGTCGCAAACTGGGAGTATAAAAAAATCAATACAAACCG    377
                     |||||.|||||.|||||.||||||||.||.||||||.|.|||||.||.|.
BPUM_0742___y    325 TCAAACGAAACGGTCGCCAACTGGGAATACAAAAAAGTGAATACGAATCA    374

BSNT_01327___    378 TGCGGATAACCGCGGCGGGAAAGAAACGGC---TG--AAATGCATTATGC    422
                     ....||||||.|.||.||.||..||||.||   ||  ||||.|.||    
BPUM_0742___y    375 CATTGATAACAGAGGTGGCAACAAAACAGCCATTGGCAAATACGTT----    420

BSNT_01327___    423 CCAGGAACAGCAGTACAGAGTGAA------GGGCGGCCTGACAGCTAAAG    466
                         .||.|||||.|   ||||||      .|||||.||.|||||.||.|
BPUM_0742___y    421 ----CAAAAGCAGCA---AGTGAAAGTAAGCGGCGGGCTCACAGCAAAGG    463

BSNT_01327___    467 TTCCAAATGCTGAAGATGTCAAAAGCA-TGATGATGCAAAAAGCAATGAA    515
                     |.|||||..|.||||||||.|||| || ||||||||||||||||.||..|
BPUM_0742___y    464 TGCCAAACCCGGAAGATGTGAAAA-CATTGATGATGCAAAAAGCGATTCA    512

BSNT_01327___    516 GAAAACGAACCTTCCGCTTGCATTTGAGACGGTCATTGGGGCTGGCACAA    565
                     .|||||.||.||.||.||.||||||||.||.||||||||.||.||.||||
BPUM_0742___y    513 AAAAACAAAGCTGCCCCTCGCATTTGACACAGTCATTGGCGCAGGAACAA    562

BSNT_01327___    566 AACGGGATCAGATTTATA--AAGTCGCTCCTAAAAAA-----ATCGGTTA    608
                     ||||.||||||  |.|||  |.|||.||||.||||||     .||..|| 
BPUM_0742___y    563 AACGAGATCAG--TCATACCATGTCTCTCCGAAAAAAGCAGCCTCACTT-    609

BSNT_01327___    609 TTTACATGCATATGCACCGGCTGTGAATGAAAAAGGAAAAGTGACTTACG    658
                         |||||.||||||||.||..|.||.||||||||.||.||.||.||||
BPUM_0742___y    610 ----CATGCCTATGCACCAGCCATTAACGAAAAAGGGAAGGTCACATACG    655

BSNT_01327___    659 GAGAAGTGTACTTAGTGCTGAAAGGAAATAAACGAAAACTCGTCGTGAAA    708
                     |||||||||||.|.||.||.||||||||||||||.|||||||||||.|||
BPUM_0742___y    656 GAGAAGTGTACCTTGTACTCAAAGGAAATAAACGCAAACTCGTCGTAAAA    705

BSNT_01327___    709 AATGTCACGTCACAGGGAATCGGCGCGTGGATTCCAGTTCAAGATCATGT    758
                     ||.||.||.||.||.|||||||||||.||||||||.|||||.||||||.|
BPUM_0742___y    706 AACGTGACCTCGCAAGGAATCGGCGCTTGGATTCCTGTTCAGGATCATCT    755

BSNT_01327___    759 CACGTTTGGTTTTCAGCTTTCCTCACTGCCAAGA--TAA    795
                     .||||||||.|||||           .|..|.||  |||
BPUM_0742___y    756 GACGTTTGGGTTTCA-----------AGGGATGAATTAA    783


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