Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01324 and BPUM_0739

See Amino acid alignment / Visit BSNT_01324 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:55
# Commandline: needle
#    -asequence dna-align/BSNT_01324___yfkF.1.24716.seq
#    -bsequence dna-align/BPUM_0739___yfkF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01324___yfkF-BPUM_0739___yfkF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01324___yfkF-BPUM_0739___yfkF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01324___yfkF
# 2: BPUM_0739___yfkF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1298
# Identity:     797/1298 (61.4%)
# Similarity:   797/1298 (61.4%)
# Gaps:         238/1298 (18.3%)
# Score: 2283.5
# 
#
#=======================================

BSNT_01324___      1 ATGTCACGATTTCATTTCTTTATCCTT---GTCTTGCTCGTATCCATTTC     47
                     |||||..||.||||   ||||||..||   .|.||.||.|||||..|.||
BPUM_0739___y      1 ATGTCGAGAATTCA---CTTTATGATTTTAATTTTACTTGTATCTGTATC     47

BSNT_01324___     48 CGGGTTTTCACAAGGCATGCTGCTGCCTGTCATTTCAATCATTTTTGAAA     97
                     .||.||||||||.||...|.|.||||||||||||||.||.||||||||  
BPUM_0739___y     48 TGGTTTTTCACAGGGAGCGTTACTGCCTGTCATTTCGATTATTTTTGA--     95

BSNT_01324___     98 CAAATGGAGAATCCG------CTGCTA---TCAACGGCCTGCACGCGACC    138
                      |.|||      |||      ||.|||   |.|||||.|||||.||.||.
BPUM_0739___y     96 -ACATG------CCGGTACTTCTCCTACGTTAAACGGACTGCATGCCACA    138

BSNT_01324___    139 GGGCTGTATATCGGTGTGCTTTTGGCTTCGCCGTTTATGGAAGCGCCGCT    188
                     ||..|.|||.||||.||.||..|.||.||.||.|||||||||||||||||
BPUM_0739___y    139 GGCTTATATCTCGGCGTACTGCTAGCATCTCCATTTATGGAAGCGCCGCT    188

BSNT_01324___    189 CAGAAAGCTCGGGTTCAAGCCGCTGATCGTCATGGGCGGAAGCATTGTCA    238
                     ..|...|.|.|||||.||||||.|.||.|||||.||.||...|..||||.
BPUM_0739___y    189 TCGCCGGTTTGGGTTTAAGCCGTTAATTGTCATTGGAGGCGCCGCTGTCT    238

BSNT_01324___    239 TTTTAAGCTTATTCGGATTTATTTGGCTTCAGTC---AGTTTGGGTCTGG    285
                     ||||||||||.|||.|.|||.|.|...||.|.||   .|||   ||||||
BPUM_0739___y    239 TTTTAAGCTTGTTCAGTTTTGTGTTTTTTGAATCTTATGTT---GTCTGG    285

BSNT_01324___    286 TTCCTGCTTCGCCTGTTCATTGGAATCGGCGACCACATGCTTCACTTTTC    335
                     |||.|.||.||.||..|.||.||.||.||.||.||.|||||.||.||.||
BPUM_0739___y    286 TTCTTCCTGCGGCTCATGATCGGGATTGGTGATCATATGCTCCATTTCTC    335

BSNT_01324___    336 TACGCAAACGTGGGTGACCTCCAT-----GTCATCAAAACAAAATCGCGG    380
                     |||.||.|||||||||||||  ||     ||||||.|   .|||.|||||
BPUM_0739___y    336 TACACAGACGTGGGTGACCT--ATGCGTCGTCATCGA---GAAACCGCGG    380

BSNT_01324___    381 AAGAAACCTGTCTATT-TACGGGCTTTCCTTTGGCCTTGGCTTTGCCGCA    429
                     ..||||..|.|| ||| ||.|||.|.||.|||||.|||||.||||||||.
BPUM_0739___y    381 GCGAAATATTTC-ATTGTATGGGTTATCTTTTGGACTTGGTTTTGCCGCT    429

BSNT_01324___    430 GGCCCGTT-----CATGGTGCCGC---TTG---TCAAGCTGAGTCCGTCG    468
                     ||.||.||     ||     ||.|   |||   ||||      .||.||.
BPUM_0739___y    430 GGACCTTTTTTAACA-----CCACTCATTGAAATCAA------CCCATCA    468

BSNT_01324___    469 CTTCCTTTTATCGTGTCCGGCTGCATCAGTCTGTTTGC--------GTGG    510
                     .|.|||||.||.||.||.|| ||       |||||.||        .|||
BPUM_0739___y    469 TTACCTTTCATTGTTTCTGG-TG-------CTGTTAGCTTATGTATTTGG    510

BSNT_01324___    511 CTTTTTGT-TTTCTTTCTACAAAATGCATACCCGGAAAC----------C    549
                     ||..|||| |||.||| |..|||||.||||.||.||.||          |
BPUM_0739___y    511 CTGCTTGTGTTTGTTT-TGAAAAATACATATCCAGATACGGGCGAAGTAC    559

BSNT_01324___    550 AGTCCTCATGAAACCAAATCAGAC-AATAGTTTCAGGCGATTTTATCAGG    598
                     ||.|.||| |||       ||||| ||||||||.|.|||.|||.|..|.|
BPUM_0739___y    560 AGACGTCA-GAA-------CAGACAAATAGTTTGAAGCGCTTTAAGAAAG    601

BSNT_01324___    599 CCATGCTGTTTGGGTGGGTTGCCTTTATGCCTACATTTGGCTATGGCTTT    648
                     ||.|.|..|||||.|||||.|||||||||....|.|||.|||||||||||
BPUM_0739___y    602 CCTTCCAATTTGGCTGGGTCGCCTTTATGATGCCGTTTTGCTATGGCTTT    651

BSNT_01324___    649 TTGGAAACGGCGCTGAACGGAAGCTTTCCGGTGTACGCGCTCCGTTTGGG    698
                     ||.||||||.|.||.||..|.|.|||.||.|||||.||.|||.|....||
BPUM_0739___y    652 TTAGAAACGACACTTAATAGCAACTTCCCTGTGTATGCACTCAGAAGCGG    701

BSNT_01324___    699 GATATCAGTAGACGCAGTAGCGATCATCCTTCCCGCATTTGCGATTGGAA    748
                     |.|..||||.||.|||||.|||.|.||..|.||.||.|||||.|||||.|
BPUM_0739___y    702 GGTGACAGTGGATGCAGTGGCGTTTATTTTACCTGCGTTTGCTATTGGGA    751

BSNT_01324___    749 GCATTATTTTTCAGTTTCCGCTCGGCATCCTCAGCGATAAATACGGCAGG    798
                     |.|||.|.||||||.|.||.|||||.||.||.|||||....|..||||||
BPUM_0739___y    752 GTATTGTCTTTCAGCTGCCTCTCGGGATGCTTAGCGACCGGTTTGGCAGG    801

BSNT_01324___    799 CGGAATGTGCTGCTGGTGATTTT-------ACTGACTGG--GGCTCTTTG    839
                     |       ||.||  .|.|||||       |||  ||.|  ||.||||| 
BPUM_0739___y    802 C-------GCCGC--ATCATTTTATGTGTCACT--CTCGTTGGATCTTT-    839

BSNT_01324___    840 CTTTTTC---ATCGCCGGTGTATTTCCTTCGCCTTACGTGATC------G    880
                     |||||||   .|.||.||..| ||||.|||         .|||      |
BPUM_0739___y    840 CTTTTTCTTATTAGCAGGAAT-TTTCATTC---------AATCAGTTTTG    879

BSNT_01324___    881 GCGGCTGC-------TTTTTTATTGCGGGAATGGCAGTCGGATCAACCTT    923
                     ||.|.|||       ||.||||||||.||||||||.||.||.||.||.||
BPUM_0739___y    880 GCTGTTGCAATTTGTTTCTTTATTGCCGGAATGGCTGTAGGCTCTACTTT    929

BSNT_01324___    924 TACACTTGGCATCAGCTATATGACAGATCTTCTTCCGCC---TCATCTCC    970
                     ..|||||||||||||.||||||||.|| |||.||  |||   .|||||.|
BPUM_0739___y    930 CTCACTTGGCATCAGTTATATGACCGA-CTTATT--GCCAAAGCATCTGC    976

BSNT_01324___    971 TGCCGGCGGGAAACCTGCTTTGCGGCATTACATTCAGTCTCGGCAGCATC   1020
                     |.||.||.|||||..||.|.|||||.||..||||.|||...||.||.||.
BPUM_0739___y    977 TTCCTGCTGGAAATTTGATGTGCGGAATGGCATTTAGTGCGGGAAGTATT   1026

BSNT_01324___   1021 CTCGGTCCGGTTGCCGGCGGCTGG----TATATGCAGACATTTGAAAGCG   1066
                     |||||.||.|||..|||    |||    |.|.||||.||.||||||   |
BPUM_0739___y   1027 CTCGGGCCTGTTCTCGG----TGGAATCTTTGTGCAAACGTTTGAA---G   1069

BSNT_01324___   1067 CAA--ACTTGTTCTACTTCATTAC--TCTCACGCTTAGCGCTGT-----G   1107
                     .||  |.||    ||||   ||||  |.||| ||.|.|.|.|.|     |
BPUM_0739___y   1070 GAATGAATT----TACT---TTACCTTGTCA-GCATTGTGATATTATTCG   1111

BSNT_01324___   1108 TGGCTGGCCCTTGTGC--------TGGGCAAACCGAAAAGCTGGTCACCG   1149
                     ||..|     ||.|||        |||||.|||.|             ||
BPUM_0739___y   1112 TGTTT-----TTCTGCGTTCGATTTGGGCGAACGG-------------CG   1143

BSNT_01324___   1150 GC------------------TGAAACCTATTCTTCATCTTCTTAA---   1176
                     ||                  ||||.|        ||| ||||.||   
BPUM_0739___y   1144 GCAGTTCTGGAAAACTCCAATGAAGC--------CAT-TTCTAAATAA   1182


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