Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01324 and BPUM_0739
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:55
# Commandline: needle
# -asequence dna-align/BSNT_01324___yfkF.1.24716.seq
# -bsequence dna-align/BPUM_0739___yfkF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01324___yfkF-BPUM_0739___yfkF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01324___yfkF-BPUM_0739___yfkF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01324___yfkF
# 2: BPUM_0739___yfkF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1298
# Identity: 797/1298 (61.4%)
# Similarity: 797/1298 (61.4%)
# Gaps: 238/1298 (18.3%)
# Score: 2283.5
#
#
#=======================================
BSNT_01324___ 1 ATGTCACGATTTCATTTCTTTATCCTT---GTCTTGCTCGTATCCATTTC 47
|||||..||.|||| ||||||..|| .|.||.||.|||||..|.||
BPUM_0739___y 1 ATGTCGAGAATTCA---CTTTATGATTTTAATTTTACTTGTATCTGTATC 47
BSNT_01324___ 48 CGGGTTTTCACAAGGCATGCTGCTGCCTGTCATTTCAATCATTTTTGAAA 97
.||.||||||||.||...|.|.||||||||||||||.||.||||||||
BPUM_0739___y 48 TGGTTTTTCACAGGGAGCGTTACTGCCTGTCATTTCGATTATTTTTGA-- 95
BSNT_01324___ 98 CAAATGGAGAATCCG------CTGCTA---TCAACGGCCTGCACGCGACC 138
|.||| ||| ||.||| |.|||||.|||||.||.||.
BPUM_0739___y 96 -ACATG------CCGGTACTTCTCCTACGTTAAACGGACTGCATGCCACA 138
BSNT_01324___ 139 GGGCTGTATATCGGTGTGCTTTTGGCTTCGCCGTTTATGGAAGCGCCGCT 188
||..|.|||.||||.||.||..|.||.||.||.|||||||||||||||||
BPUM_0739___y 139 GGCTTATATCTCGGCGTACTGCTAGCATCTCCATTTATGGAAGCGCCGCT 188
BSNT_01324___ 189 CAGAAAGCTCGGGTTCAAGCCGCTGATCGTCATGGGCGGAAGCATTGTCA 238
..|...|.|.|||||.||||||.|.||.|||||.||.||...|..||||.
BPUM_0739___y 189 TCGCCGGTTTGGGTTTAAGCCGTTAATTGTCATTGGAGGCGCCGCTGTCT 238
BSNT_01324___ 239 TTTTAAGCTTATTCGGATTTATTTGGCTTCAGTC---AGTTTGGGTCTGG 285
||||||||||.|||.|.|||.|.|...||.|.|| .||| ||||||
BPUM_0739___y 239 TTTTAAGCTTGTTCAGTTTTGTGTTTTTTGAATCTTATGTT---GTCTGG 285
BSNT_01324___ 286 TTCCTGCTTCGCCTGTTCATTGGAATCGGCGACCACATGCTTCACTTTTC 335
|||.|.||.||.||..|.||.||.||.||.||.||.|||||.||.||.||
BPUM_0739___y 286 TTCTTCCTGCGGCTCATGATCGGGATTGGTGATCATATGCTCCATTTCTC 335
BSNT_01324___ 336 TACGCAAACGTGGGTGACCTCCAT-----GTCATCAAAACAAAATCGCGG 380
|||.||.||||||||||||| || ||||||.| .|||.|||||
BPUM_0739___y 336 TACACAGACGTGGGTGACCT--ATGCGTCGTCATCGA---GAAACCGCGG 380
BSNT_01324___ 381 AAGAAACCTGTCTATT-TACGGGCTTTCCTTTGGCCTTGGCTTTGCCGCA 429
..||||..|.|| ||| ||.|||.|.||.|||||.|||||.||||||||.
BPUM_0739___y 381 GCGAAATATTTC-ATTGTATGGGTTATCTTTTGGACTTGGTTTTGCCGCT 429
BSNT_01324___ 430 GGCCCGTT-----CATGGTGCCGC---TTG---TCAAGCTGAGTCCGTCG 468
||.||.|| || ||.| ||| |||| .||.||.
BPUM_0739___y 430 GGACCTTTTTTAACA-----CCACTCATTGAAATCAA------CCCATCA 468
BSNT_01324___ 469 CTTCCTTTTATCGTGTCCGGCTGCATCAGTCTGTTTGC--------GTGG 510
.|.|||||.||.||.||.|| || |||||.|| .|||
BPUM_0739___y 469 TTACCTTTCATTGTTTCTGG-TG-------CTGTTAGCTTATGTATTTGG 510
BSNT_01324___ 511 CTTTTTGT-TTTCTTTCTACAAAATGCATACCCGGAAAC----------C 549
||..|||| |||.||| |..|||||.||||.||.||.|| |
BPUM_0739___y 511 CTGCTTGTGTTTGTTT-TGAAAAATACATATCCAGATACGGGCGAAGTAC 559
BSNT_01324___ 550 AGTCCTCATGAAACCAAATCAGAC-AATAGTTTCAGGCGATTTTATCAGG 598
||.|.||| ||| ||||| ||||||||.|.|||.|||.|..|.|
BPUM_0739___y 560 AGACGTCA-GAA-------CAGACAAATAGTTTGAAGCGCTTTAAGAAAG 601
BSNT_01324___ 599 CCATGCTGTTTGGGTGGGTTGCCTTTATGCCTACATTTGGCTATGGCTTT 648
||.|.|..|||||.|||||.|||||||||....|.|||.|||||||||||
BPUM_0739___y 602 CCTTCCAATTTGGCTGGGTCGCCTTTATGATGCCGTTTTGCTATGGCTTT 651
BSNT_01324___ 649 TTGGAAACGGCGCTGAACGGAAGCTTTCCGGTGTACGCGCTCCGTTTGGG 698
||.||||||.|.||.||..|.|.|||.||.|||||.||.|||.|....||
BPUM_0739___y 652 TTAGAAACGACACTTAATAGCAACTTCCCTGTGTATGCACTCAGAAGCGG 701
BSNT_01324___ 699 GATATCAGTAGACGCAGTAGCGATCATCCTTCCCGCATTTGCGATTGGAA 748
|.|..||||.||.|||||.|||.|.||..|.||.||.|||||.|||||.|
BPUM_0739___y 702 GGTGACAGTGGATGCAGTGGCGTTTATTTTACCTGCGTTTGCTATTGGGA 751
BSNT_01324___ 749 GCATTATTTTTCAGTTTCCGCTCGGCATCCTCAGCGATAAATACGGCAGG 798
|.|||.|.||||||.|.||.|||||.||.||.|||||....|..||||||
BPUM_0739___y 752 GTATTGTCTTTCAGCTGCCTCTCGGGATGCTTAGCGACCGGTTTGGCAGG 801
BSNT_01324___ 799 CGGAATGTGCTGCTGGTGATTTT-------ACTGACTGG--GGCTCTTTG 839
| ||.|| .|.||||| ||| ||.| ||.|||||
BPUM_0739___y 802 C-------GCCGC--ATCATTTTATGTGTCACT--CTCGTTGGATCTTT- 839
BSNT_01324___ 840 CTTTTTC---ATCGCCGGTGTATTTCCTTCGCCTTACGTGATC------G 880
||||||| .|.||.||..| ||||.||| .||| |
BPUM_0739___y 840 CTTTTTCTTATTAGCAGGAAT-TTTCATTC---------AATCAGTTTTG 879
BSNT_01324___ 881 GCGGCTGC-------TTTTTTATTGCGGGAATGGCAGTCGGATCAACCTT 923
||.|.||| ||.||||||||.||||||||.||.||.||.||.||
BPUM_0739___y 880 GCTGTTGCAATTTGTTTCTTTATTGCCGGAATGGCTGTAGGCTCTACTTT 929
BSNT_01324___ 924 TACACTTGGCATCAGCTATATGACAGATCTTCTTCCGCC---TCATCTCC 970
..|||||||||||||.||||||||.|| |||.|| ||| .|||||.|
BPUM_0739___y 930 CTCACTTGGCATCAGTTATATGACCGA-CTTATT--GCCAAAGCATCTGC 976
BSNT_01324___ 971 TGCCGGCGGGAAACCTGCTTTGCGGCATTACATTCAGTCTCGGCAGCATC 1020
|.||.||.|||||..||.|.|||||.||..||||.|||...||.||.||.
BPUM_0739___y 977 TTCCTGCTGGAAATTTGATGTGCGGAATGGCATTTAGTGCGGGAAGTATT 1026
BSNT_01324___ 1021 CTCGGTCCGGTTGCCGGCGGCTGG----TATATGCAGACATTTGAAAGCG 1066
|||||.||.|||..||| ||| |.|.||||.||.|||||| |
BPUM_0739___y 1027 CTCGGGCCTGTTCTCGG----TGGAATCTTTGTGCAAACGTTTGAA---G 1069
BSNT_01324___ 1067 CAA--ACTTGTTCTACTTCATTAC--TCTCACGCTTAGCGCTGT-----G 1107
.|| |.|| |||| |||| |.||| ||.|.|.|.|.| |
BPUM_0739___y 1070 GAATGAATT----TACT---TTACCTTGTCA-GCATTGTGATATTATTCG 1111
BSNT_01324___ 1108 TGGCTGGCCCTTGTGC--------TGGGCAAACCGAAAAGCTGGTCACCG 1149
||..| ||.||| |||||.|||.| ||
BPUM_0739___y 1112 TGTTT-----TTCTGCGTTCGATTTGGGCGAACGG-------------CG 1143
BSNT_01324___ 1150 GC------------------TGAAACCTATTCTTCATCTTCTTAA--- 1176
|| ||||.| ||| ||||.||
BPUM_0739___y 1144 GCAGTTCTGGAAAACTCCAATGAAGC--------CAT-TTCTAAATAA 1182
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