Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01303 and BPUM_0730

See Amino acid alignment / Visit BSNT_01303 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:53
# Commandline: needle
#    -asequence dna-align/BSNT_01303___treR.1.24716.seq
#    -bsequence dna-align/BPUM_0730___treR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01303___treR-BPUM_0730___treR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01303___treR-BPUM_0730___treR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01303___treR
# 2: BPUM_0730___treR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 769
# Identity:     513/769 (66.7%)
# Similarity:   513/769 (66.7%)
# Gaps:          92/769 (12.0%)
# Score: 1666.5
# 
#
#=======================================

BSNT_01303___      1 ATGAAGGTGAATAAATTCATCACA---ATTTATAAAGACATCGCACAGCA     47
                     |||||.|.||||||.||  || .|   ||||||.|..|..|||||.|.|.
BPUM_0730___t      1 ATGAAAGAGAATAAGTT--TC-GAGTGATTTATGATCAGCTCGCAAAACG     47

BSNT_01303___     48 AATTGAA----------GGCGGCCGATGGAAAGCGGAGGAG-ATTCTTCC     86
                     |||||||          |||.|  |||  ||||       | |||||.||
BPUM_0730___t     48 AATTGAACAAGGTGAATGGCAG--GAT--AAAG-------GCATTCTGCC     86

BSNT_01303___     87 GTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCC    136
                     .||.||.||||||.||.||.....|||.|..|||||..|.||.|||||..
BPUM_0730___t     87 ATCAGAGCATGAGCTGTCCTTGATGTATGACACATCCCGTGAGACGGTAA    136

BSNT_01303___    137 GAAAGGCGCTTCATATGCTCGCGCAAAACGGTTATATCCAGAAAATCAGG    186
                     |||||||..|..||||.||.|.||||||.||.||||||||.||||||.|.
BPUM_0730___t    137 GAAAGGCATTAAATATCCTTGTGCAAAATGGCTATATCCAAAAAATCCGC    186

BSNT_01303___    187 GGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTC    236
                     ||.||||||||.|||.|.||.|||||.||.||||||||.||.||.||.||
BPUM_0730___t    187 GGGAAAGGCTCTGTCTTACTGAATCGAGAGAAAATGCAATTCCCAGTCTC    236

BSNT_01303___    237 GGGCCTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGA    286
                     |||.|||||||||||.||.||.||..|.||||||||||||       ||.
BPUM_0730___t    237 GGGTCTTGTCAGCTTTAAAGAACTTTCTCAAACGCTTGGC-------CGG    279

BSNT_01303___    287 AA-------ACAACTGTACACAAATTCGG---------GCTGGAGC----    316
                     ||       ||.||.||.|||.||||.||         .|.|||.|    
BPUM_0730___t    280 AAGACTGTTACGACGGTTCACGAATTTGGTTTAATCAAACCGGATCAGTA    329

BSNT_01303___    317 --CTCCGTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACG    364
                       .||.|||..|||||    ||||..||   .||||        |.||.|
BPUM_0730___t    330 TATTCAGTCTCAGCTG----AAAATAAG---TGGGC--------AGGAGG    364

BSNT_01303___    365 ACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACGGGGAACATGTGATT    414
                     |..|||||||||||||..|||||.|.||.|||..|||.|||.|.||||||
BPUM_0730___t    365 ATGTCTGGGAAGTCATTCGGTCTCGTAATATTAGCGGAGAAGAAGTGATT    414

BSNT_01303___    415 TTGGACAAGGATTACTTTTT-CAGAAAGCA--TGTCCCTCACCTGACGAA    461
                     ||.||||||||||||||||| || ||||||  |||||.|  |.||.|.||
BPUM_0730___t    415 TTAGACAAGGATTACTTTTTGCA-AAAGCATGTGTCCGT--CTTGTCAAA    461

BSNT_01303___    462 AGAAATTTGTGAAAACTCCATATATGAATATATAGAAGGAGAGCTCGGTC    511
                     |||.||.||.|||...|||||.||.||.|||||.|||||||||||.|||.
BPUM_0730___t    462 AGACATATGCGAAGGGTCCATCTACGAGTATATTGAAGGAGAGCTTGGTG    511

BSNT_01303___    512 TTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGAC    561
                     |.||.|||||.||.||||||||.|||.||||.|..|||||.|||||.||.
BPUM_0730___t    512 TATCAATCAGCTATGCCCAAAAGGAATTTGTGGTAGAGCCATGTACAGAA    561

BSNT_01303___    562 GAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGT    611
                     ||||||....||...||.|||||...|||.|.|||||||.|.|||||.||
BPUM_0730___t    562 GAGGACGCCAAGTATCTTGATTTGAACGGGTTTGACCATGTTGTCGTCGT    611

BSNT_01303___    612 GAGAAACTACGTCTTTTTGGAGGATACCAGTTTGTTTCAATATACGGAAA    661
                     ||..||.|||||.||.||.||||||||.|||||.||||||||.||.||||
BPUM_0730___t    612 GAAGAATTACGTGTTCTTAGAGGATACAAGTTTATTTCAATACACTGAAA    661

BSNT_01303___    662 GCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCG----    707
                     ||.|.|||||..|.|||...|||.||||.|||||||||||..|..|    
BPUM_0730___t    662 GCCGTCACCGATTAGACCGCTTCAGATTCGTTGATTTTGCAAGAAGAGAA    711

BSNT_01303___    708 ---GGGGAAATGA------    717
                        |.|||.| ||      
BPUM_0730___t    712 AAAGTGGACA-GAGCATAG    729


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