Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01303 and BPUM_0730
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:53
# Commandline: needle
# -asequence dna-align/BSNT_01303___treR.1.24716.seq
# -bsequence dna-align/BPUM_0730___treR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01303___treR-BPUM_0730___treR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01303___treR-BPUM_0730___treR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01303___treR
# 2: BPUM_0730___treR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 769
# Identity: 513/769 (66.7%)
# Similarity: 513/769 (66.7%)
# Gaps: 92/769 (12.0%)
# Score: 1666.5
#
#
#=======================================
BSNT_01303___ 1 ATGAAGGTGAATAAATTCATCACA---ATTTATAAAGACATCGCACAGCA 47
|||||.|.||||||.|| || .| ||||||.|..|..|||||.|.|.
BPUM_0730___t 1 ATGAAAGAGAATAAGTT--TC-GAGTGATTTATGATCAGCTCGCAAAACG 47
BSNT_01303___ 48 AATTGAA----------GGCGGCCGATGGAAAGCGGAGGAG-ATTCTTCC 86
||||||| |||.| ||| |||| | |||||.||
BPUM_0730___t 48 AATTGAACAAGGTGAATGGCAG--GAT--AAAG-------GCATTCTGCC 86
BSNT_01303___ 87 GTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCC 136
.||.||.||||||.||.||.....|||.|..|||||..|.||.|||||..
BPUM_0730___t 87 ATCAGAGCATGAGCTGTCCTTGATGTATGACACATCCCGTGAGACGGTAA 136
BSNT_01303___ 137 GAAAGGCGCTTCATATGCTCGCGCAAAACGGTTATATCCAGAAAATCAGG 186
|||||||..|..||||.||.|.||||||.||.||||||||.||||||.|.
BPUM_0730___t 137 GAAAGGCATTAAATATCCTTGTGCAAAATGGCTATATCCAAAAAATCCGC 186
BSNT_01303___ 187 GGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTC 236
||.||||||||.|||.|.||.|||||.||.||||||||.||.||.||.||
BPUM_0730___t 187 GGGAAAGGCTCTGTCTTACTGAATCGAGAGAAAATGCAATTCCCAGTCTC 236
BSNT_01303___ 237 GGGCCTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGA 286
|||.|||||||||||.||.||.||..|.|||||||||||| ||.
BPUM_0730___t 237 GGGTCTTGTCAGCTTTAAAGAACTTTCTCAAACGCTTGGC-------CGG 279
BSNT_01303___ 287 AA-------ACAACTGTACACAAATTCGG---------GCTGGAGC---- 316
|| ||.||.||.|||.||||.|| .|.|||.|
BPUM_0730___t 280 AAGACTGTTACGACGGTTCACGAATTTGGTTTAATCAAACCGGATCAGTA 329
BSNT_01303___ 317 --CTCCGTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACG 364
.||.|||..||||| ||||..|| .|||| |.||.|
BPUM_0730___t 330 TATTCAGTCTCAGCTG----AAAATAAG---TGGGC--------AGGAGG 364
BSNT_01303___ 365 ACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACGGGGAACATGTGATT 414
|..|||||||||||||..|||||.|.||.|||..|||.|||.|.||||||
BPUM_0730___t 365 ATGTCTGGGAAGTCATTCGGTCTCGTAATATTAGCGGAGAAGAAGTGATT 414
BSNT_01303___ 415 TTGGACAAGGATTACTTTTT-CAGAAAGCA--TGTCCCTCACCTGACGAA 461
||.||||||||||||||||| || |||||| |||||.| |.||.|.||
BPUM_0730___t 415 TTAGACAAGGATTACTTTTTGCA-AAAGCATGTGTCCGT--CTTGTCAAA 461
BSNT_01303___ 462 AGAAATTTGTGAAAACTCCATATATGAATATATAGAAGGAGAGCTCGGTC 511
|||.||.||.|||...|||||.||.||.|||||.|||||||||||.|||.
BPUM_0730___t 462 AGACATATGCGAAGGGTCCATCTACGAGTATATTGAAGGAGAGCTTGGTG 511
BSNT_01303___ 512 TTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGAC 561
|.||.|||||.||.||||||||.|||.||||.|..|||||.|||||.||.
BPUM_0730___t 512 TATCAATCAGCTATGCCCAAAAGGAATTTGTGGTAGAGCCATGTACAGAA 561
BSNT_01303___ 562 GAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGT 611
||||||....||...||.|||||...|||.|.|||||||.|.|||||.||
BPUM_0730___t 562 GAGGACGCCAAGTATCTTGATTTGAACGGGTTTGACCATGTTGTCGTCGT 611
BSNT_01303___ 612 GAGAAACTACGTCTTTTTGGAGGATACCAGTTTGTTTCAATATACGGAAA 661
||..||.|||||.||.||.||||||||.|||||.||||||||.||.||||
BPUM_0730___t 612 GAAGAATTACGTGTTCTTAGAGGATACAAGTTTATTTCAATACACTGAAA 661
BSNT_01303___ 662 GCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCG---- 707
||.|.|||||..|.|||...|||.||||.|||||||||||..|..|
BPUM_0730___t 662 GCCGTCACCGATTAGACCGCTTCAGATTCGTTGATTTTGCAAGAAGAGAA 711
BSNT_01303___ 708 ---GGGGAAATGA------ 717
|.|||.| ||
BPUM_0730___t 712 AAAGTGGACA-GAGCATAG 729
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