Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01294 and BPUM_0727
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:53
# Commandline: needle
# -asequence dna-align/BSNT_01294.1.24716.seq
# -bsequence dna-align/BPUM_0727.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01294-BPUM_0727.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01294-BPUM_0727.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01294
# 2: BPUM_0727
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 443
# Identity: 242/443 (54.6%)
# Similarity: 242/443 (54.6%)
# Gaps: 103/443 (23.3%)
# Score: 587.5
#
#
#=======================================
BSNT_01294 1 ATGATGGATTTTTCCCATATTGTGTCTGAAGA------TAAAATTAAGCG 44
|||||||||.|.||.|...|.||.||||| .|||| |||||
BPUM_0727 1 ---ATGGATTTTGCGCAGAGATTATCAGAAGAACGGATCAAAA--AAGCG 45
BSNT_01294 45 CGCCATCAAAGACGGGGACTTTCAAA-----ACCTCCCGGGAATGGGGAA 89
||..|..|||||| ||||..|| |.|| ||..|.||.||
BPUM_0727 46 ----ATGGATAACGGGG-CTTTTGAAGGATTATCT----GGCTTTGGCAA 86
BSNT_01294 90 GCCGCTGCCGAAGGATGACGCGGCACACTTGCCGGAATCGCTGCGCATGG 139
.||.|||||.||.||||||||.||.||..|.||.|||...||..|.||||
BPUM_0727 87 ACCTCTGCCTAAAGATGACGCTGCTCATATACCTGAAGAACTAAGAATGG 136
BSNT_01294 140 GCTATCGTATTTTGAAAAACGCGGGAATGGCAGAGGACGAGGGCGCGCTC 189
|||||||.||..|||||||.||.||..|.||.|.|||.||....||.||.
BPUM_0727 137 GCTATCGGATGATGAAAAATGCTGGCTTTGCTGGGGAAGAAACAGCACTG 186
BSNT_01294 190 AAAAAAGAGCTTATGACCATCGACCATTTAATCGAAAAGTGCT--ATGAC 237
||||||||.||.||||||.||.| |.||.|||| ||..|
BPUM_0727 187 AAAAAAGAACTCATGACCGTCAA-----------AGAACTGCTTCATTCC 225
BSNT_01294 238 GAAAAAGAACGCGAGCAATTAATCAGAAAAAA------------ATCT-- 273
...|.|||..|.|||.|| |||||||| ||.|
BPUM_0727 226 AGTATAGACGGTGAGGAA------AGAAAAAAGCTTTCTCTCATATGTGA 269
BSNT_01294 274 -GAAAAGCAATTGCTGCTTGATAAGCT----TGT---CGACAAAAAAGGC 315
|||||.|||...|..||.|||.|.|| |.| ||.||||
BPUM_0727 270 AGAAAAACAAAAACGACTGGATGAACTCACATCTAAGCGGCAAA------ 313
BSNT_01294 316 ATGTTTTCAAAG-----CCAGCATCCGCTTTTTATAAGAATAAAGT---- 356
.|||| | |||||.|||.|.||||||||.||.|..||
BPUM_0727 314 --CTTTT----GCTCGTCCAGCCTCCTCCTTTTATAAAAACAGGGTCTAC 357
BSNT_01294 357 ---ATATGACCGGCTTGGACGAAACAGACCTTCTTCCAGCTGA 396
|.||.|.||| .|.|..|||.| ||.|||
BPUM_0727 358 GAAAAATTAACGG--AGCATAAAAAA-----------AGATGA 387
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