Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01281 and BPUM_0715

See Amino acid alignment / Visit BSNT_01281 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:52
# Commandline: needle
#    -asequence dna-align/BSNT_01281___yflL.1.24716.seq
#    -bsequence dna-align/BPUM_0715.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01281___yflL-BPUM_0715.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01281___yflL-BPUM_0715.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01281___yflL
# 2: BPUM_0715
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 349
# Identity:     182/349 (52.1%)
# Similarity:   182/349 (52.1%)
# Gaps:         113/349 (32.4%)
# Score: 479.0
# 
#
#=======================================

BSNT_01281___      1 ------------------------------------ATGCTTCAATACCG     14
                                                         .||.||||.||.| 
BPUM_0715          1 ATGCTATGGTACGATGAGAAAAAAGGAGAGATGACATTGATTCATTATC-     49

BSNT_01281___     15 AAT--CATTGTAAACGGCCGGGTTCAAGGTGTGGGCTTTCGCTATTTTGT     62
                      ||  ||||.|.|..||.|||||.||.||.||.|||||||||||||||||
BPUM_0715         50 -ATGCCATTATCACAGGACGGGTGCAGGGAGTCGGCTTTCGCTATTTTGT     98

BSNT_01281___     63 TCAAATGGAAGCTGATAAGC-------GAAAACTGGCCGGCTGGGTCAAA    105
                     .|||..||||||.|..||.|       ||||       ||||||||....
BPUM_0715         99 ACAAGGGGAAGCCGTCAATCGCGGGATGAAA-------GGCTGGGTACGT    141

BSNT_01281___    106 AACCGTGATGACGGGCGTGTCGAGATTTTGGCAGAGGGTCCGGAAAACGC    155
                     |||...|||||.||.|.|||||||.|...||.||||||   |||    ||
BPUM_0715        142 AACACAGATGAAGGACATGTCGAGTTAAAGGTAGAGGG---GGA----GC    184

BSNT_01281___    156 -CCTGCAATCGTTTG--TTGAGGCTGTAAA---------GAACGGAAGCC    193
                      .|.|.||..|.|||  ||    || ||||         |||.|||||||
BPUM_0715        185 AGCAGGAAGTGCTTGATTT----CT-TAAAGACAGTCCGGAAAGGAAGCC    229

BSNT_01281___    194 CTTTCTCAAAGGTTACCGACATCTCTGTGACTGAATCCCGCAG--CCTTG    241
                     ||||.||||||||.||.||    |.||..|.||.|    ||||  ||.||
BPUM_0715        230 CTTTTTCAAAGGTCACAGA----TATGCAAATGGA----GCAGCTCCCTG    271

BSNT_01281___    242 AAG---GC-CATCATC--GATTTTCTATTGTTTACTCATAA--------    276
                      ||   || |||.|||  ||||||          |.|||.|        
BPUM_0715        272 -AGTTCGCTCATTATCAGGATTTT----------CGCATCAAGGGATGA    309


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.