Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01281 and BPUM_0715
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:52
# Commandline: needle
# -asequence dna-align/BSNT_01281___yflL.1.24716.seq
# -bsequence dna-align/BPUM_0715.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01281___yflL-BPUM_0715.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01281___yflL-BPUM_0715.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01281___yflL
# 2: BPUM_0715
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 349
# Identity: 182/349 (52.1%)
# Similarity: 182/349 (52.1%)
# Gaps: 113/349 (32.4%)
# Score: 479.0
#
#
#=======================================
BSNT_01281___ 1 ------------------------------------ATGCTTCAATACCG 14
.||.||||.||.|
BPUM_0715 1 ATGCTATGGTACGATGAGAAAAAAGGAGAGATGACATTGATTCATTATC- 49
BSNT_01281___ 15 AAT--CATTGTAAACGGCCGGGTTCAAGGTGTGGGCTTTCGCTATTTTGT 62
|| ||||.|.|..||.|||||.||.||.||.|||||||||||||||||
BPUM_0715 50 -ATGCCATTATCACAGGACGGGTGCAGGGAGTCGGCTTTCGCTATTTTGT 98
BSNT_01281___ 63 TCAAATGGAAGCTGATAAGC-------GAAAACTGGCCGGCTGGGTCAAA 105
.|||..||||||.|..||.| |||| ||||||||....
BPUM_0715 99 ACAAGGGGAAGCCGTCAATCGCGGGATGAAA-------GGCTGGGTACGT 141
BSNT_01281___ 106 AACCGTGATGACGGGCGTGTCGAGATTTTGGCAGAGGGTCCGGAAAACGC 155
|||...|||||.||.|.|||||||.|...||.|||||| ||| ||
BPUM_0715 142 AACACAGATGAAGGACATGTCGAGTTAAAGGTAGAGGG---GGA----GC 184
BSNT_01281___ 156 -CCTGCAATCGTTTG--TTGAGGCTGTAAA---------GAACGGAAGCC 193
.|.|.||..|.||| || || |||| |||.|||||||
BPUM_0715 185 AGCAGGAAGTGCTTGATTT----CT-TAAAGACAGTCCGGAAAGGAAGCC 229
BSNT_01281___ 194 CTTTCTCAAAGGTTACCGACATCTCTGTGACTGAATCCCGCAG--CCTTG 241
||||.||||||||.||.|| |.||..|.||.| |||| ||.||
BPUM_0715 230 CTTTTTCAAAGGTCACAGA----TATGCAAATGGA----GCAGCTCCCTG 271
BSNT_01281___ 242 AAG---GC-CATCATC--GATTTTCTATTGTTTACTCATAA-------- 276
|| || |||.||| |||||| |.|||.|
BPUM_0715 272 -AGTTCGCTCATTATCAGGATTTT----------CGCATCAAGGGATGA 309
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