Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01276 and BPUM_0709
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:51
# Commandline: needle
# -asequence dna-align/BSNT_01276.1.24716.seq
# -bsequence dna-align/BPUM_0709___yflP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01276-BPUM_0709___yflP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01276-BPUM_0709___yflP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01276
# 2: BPUM_0709___yflP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1072
# Identity: 623/1072 (58.1%)
# Similarity: 623/1072 (58.1%)
# Gaps: 203/1072 (18.9%)
# Score: 1537.5
#
#
#=======================================
BSNT_01276 1 ATGAAAAAATCTATAATCC-TAT--TGATTTTACTAT------------- 34
|||||||||.|.|||..|| ||| ||||..|..|||
BPUM_0709___y 1 ATGAAAAAAGCAATATGCCTTATCGTGATCATCATATGTCTTTGTCTGGC 50
BSNT_01276 35 --TGATCTTT-ATGCAGGGTGATATCAGGCAGGCGGCTGCGCCGCGCCTG 81
|.|.|||| ||| .|.|..|||.|||||.|| |...||||
BPUM_0709___y 51 GCTCACCTTTAATG------AAAAAAAGGGAGGCGACT----CTTTCCTG 90
BSNT_01276 82 CCGGACGGGCCGATAGAAATTGTTGTCCCTGCCGAACCTTCTGGCGGCTG 131
..|.||.|.||..||.|.|||||.||..|||..|..|||..||||||||.
BPUM_0709___y 91 GAGCACAGCCCATTATATATTGTGGTGTCTGGTGTTCCTGATGGCGGCTT 140
BSNT_01276 132 GGATGTCACAGCGCAGGCGATCCAATCAGT-TTTGAGGCAGAAGCAGATC 180
.||....|||||.||.|.|||..||||||| .|||||..|||| .||.|.
BPUM_0709___y 141 TGACCAAACAGCTCAAGTGATGAAATCAGTGCTTGAGAAAGAA-AAGCTG 189
BSNT_01276 181 GTGAAG-----GGAGATGTTCATATCGTCTATAAATCCGGCGG--CGGGG 223
|||||| ||.|| |||||.|.|||.||...||||| |||.|
BPUM_0709___y 190 GTGAAGCAGCCGGTGA-----ATATCCTTTATCAAAGAGGCGGAACGGTG 234
BSNT_01276 224 GAGAGAAAGGCTGGAAATATGTCAACAAAAGC-AGCAAACAAAC--CATC 270
||.|||||.||||.||||.| .|.|.||| || ||||.||| .||.
BPUM_0709___y 235 --GATAAAGGATGGACATATAT--GCTAGAGCGAG-AAACCAACTATATT 279
BSNT_01276 271 AGCATGACGTCCAGCCTAATATTGAGCAATGATCTTCTCGG--GCAAAGT 318
||..|.|..||.||..||.|.||.|||..|.||.|.||.|| || |||
BPUM_0709___y 280 AGTTTAAATTCAAGTTTATTGTTAAGCCGTAATTTGCTTGGTAGC--AGT 327
BSNT_01276 319 AAATTAAAAATGTCCGATTTTACGCCGCTCGCCATTCTCTCCAAGGAATG 368
||..|.|.||||..||||.|.||.||||||||||||.|..|..|.||.||
BPUM_0709___y 328 AACATGACAATGAACGATGTCACACCGCTCGCCATTTTGGCAGAAGAGTG 377
BSNT_01276 369 GCAGACGGTTGCATTGCCAAAAGGATCAGCGTTAACAAATGGCAAGGATG 418
||||...||.|||.|.|||...|..||..|.||..||||.||.||||| |
BPUM_0709___y 378 GCAGGTCGTCGCAGTCCCAGTCGATTCGCCCTTTTCAAACGGGAAGGA-G 426
BSNT_01276 419 T----------GCTGAATGAGATCAACATGCATCCCGGCAAGGTGAGAAT 458
| .||.||..||| |||..|..||| .|.|.|||
BPUM_0709___y 427 TTATTAAACACACTAAAGAAGA--AACCAGATTCC-------TTAAAAAT 467
BSNT_01276 459 CGGCTTTGCCCCGGGGTTTGGCAATGATGATCAGCTCTCGTTCGTCA-GA 507
.||.||||||||.|..||.||.|||||||||||..||||||||| || |.
BPUM_0709___y 468 TGGATTTGCCCCAGATTTCGGTAATGATGATCAAATCTCGTTCG-CACGT 516
BSNT_01276 508 GCGGCAGATATGTACGGCATTGACCCGTTTGAC---ATTCAATTCTCACA 554
||||||||.|||...||.|||||.||.| || ||||||||.|...|
BPUM_0709___y 517 GCGGCAGAAATGGCTGGAATTGATCCAT---ACCGTATTCAATTTTTGAA 563
BSNT_01276 555 GTATGACA--GCAG-CGAACAGCTCATTCAG-GCGCTGATCAGA-CATGA 599
.|.||||| |||| .|| .|.||||.| |||||.|| ||| |||||
BPUM_0709___y 564 ATTTGACAGTGCAGATGA----TTTATTCCGAGCGCTCAT-AGATCATGA 608
BSNT_01276 600 GATAGAAGCGGC--------------------TTC--CATGACACTTTCT 627
..|.||.||.|| ||| ||||||
BPUM_0709___y 609 AGTTGATGCAGCAACGACCACGATTACAGAGGTTCGTCATGAC------- 651
BSNT_01276 628 GAAGCGAAACCATATG-AACGAAACGGCGATATCACGT--TAGCCGCTGT 674
|||| ||.||||.|||.|.|.|..|| .|.||.|
BPUM_0709___y 652 ------------TATGAAAAGAAAAGGCTAAAGCTTGTGGCAACCAC--- 686
BSNT_01276 675 AACGTCTGATAA-AAGACTT--CCCGGTTTTCCAAATGTACCGACGTGGA 721
|||| || |||..|| .|.||.|||..|.||||.|||||.||||
BPUM_0709___y 687 AACG------AACAAGCGTTTAGCTGGATTTGAAGATGTGCCGACTTGGA 730
BSNT_01276 722 AGGAGCAGGGAATCCCGTTTGTTTTTTCTCATTGGAGAGGGATTTTGGGC 771
|.|||||.||.||||||.|..||||.|||||||||.|.||..|..|||||
BPUM_0709___y 731 AAGAGCAAGGCATCCCGCTCATTTTCTCTCATTGGCGTGGTGTGATGGGC 780
BSNT_01276 772 CCGAAAAATATGTCTGAGGAAGAGATTTCTTACTGGGATCAAGCGCT--- 818
||.|||.|.|||..|.|..||||.||...|.|.|||||||| |||
BPUM_0709___y 781 CCAAAACAAATGAGTCAAAAAGATATACGTGAATGGGATCA---GCTTCT 827
BSNT_01276 819 --AAAGAAGGTCACCTCCTCACCTGAATGGAA---GCGGAAAA------T 857
|||.||.|.||| ||..||| |.|||||| |
BPUM_0709___y 828 TCAAAAAATGACAC-----------AAACGAAGTCGTGGAAAAAGCAATT 866
BSNT_01276 858 AAACGAACAGGACTGGGAAAGCTTTTATTTGAACAGCAGGGAAACGAAAC 907
|||..||.|||.||||..|||...||||.|||||||||..||| |.||.
BPUM_0709___y 867 AAAGCAAAAGGGCTGGACAAGTCGTTATATGAACAGCAAAGAA--GCAAA 914
BSNT_01276 908 GGTTTTTA--GAAGAGCAATCT------------GCTTTTTATCAAAGCA 943
|.|.|||| |||||.|||| | ||..||||||.|||.|
BPUM_0709___y 915 GATCTTTATGGAAGATCAAT-TAAGACGATATGAGCAGTTTATCCAAGGA 963
BSNT_01276 944 TCATG-ACAGGAAATTAA---- 960
| |||.|...||.|
BPUM_0709___y 964 ----GAACAAGCGGTTGAGTGA 981
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