Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01275 and BPUM_0708
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:51
# Commandline: needle
# -asequence dna-align/BSNT_01275___citT.1.24716.seq
# -bsequence dna-align/BPUM_0708___citT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01275___citT-BPUM_0708___citT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01275___citT-BPUM_0708___citT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01275___citT
# 2: BPUM_0708___citT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 761
# Identity: 465/761 (61.1%)
# Similarity: 465/761 (61.1%)
# Gaps: 139/761 (18.3%)
# Score: 1182.5
#
#
#=======================================
BSNT_01275___ 1 ---TTGAT--------TCACATCGCGATTGCGGAGGATGATTTTCGAGTT 39
.|||| || |||||||||||||||||||||.|
BPUM_0708___c 1 ATGGTGATGAAGGTACTC--------ATTGCGGAGGATGATTTTCGAAT- 41
BSNT_01275___ 40 GCGCA--AATCCATGAGAGAT-TGAT-TA-AACAGCTTG-ATGGATTCAA 83
|||| .||.|||| .|| |.|| || ||||..|.| |.||.|||||
BPUM_0708___c 42 -CGCAGCCATTCATG---CATCTTATATACAACAAATAGAAGGGTTTCAA 87
BSNT_01275___ 84 GATTATCGGCAAGGCGGCTAA----CGCAAAAGAGACATTGG-CGCTTTT 128
| |...|||.||||| || .||||||||.|..|.|| .|||.||
BPUM_0708___c 88 G-TCGCCGGAAAGGC----AAAGAGTGCAAAAGATATGTGGGAGGCTCTT 132
BSNT_01275___ 129 GA--AGGAACACAAGGTTGATTTGCTTC-TGCTGGATATTTATATGCCGG 175
.| |||||| |.||.||..| |.|| ||||.|||.|.||||||||.|
BPUM_0708___c 133 CAACAGGAAC---AAGTCGACCT-CATCTTGCTTGATGTGTATATGCCCG 178
BSNT_01275___ 176 ACGAGCTTGGGAC---CGCGTTGATTCCTGATATACGAAGCCGATTTCCT 222
|.||.||.||.|| |..|||| ||...|.||.||...||.|.|||.
BPUM_0708___c 179 ATGAACTCGGCACAAACCTGTTG---CCGCTTTTAAGAGAACGCTATCCA 225
BSNT_01275___ 223 GAAGTGGACATTATGATTATCACAGCGGCAACAGAAACCCGGCA-TTTGC 271
|||||.||..|.||||||||||||||.||.||.|||| ||.|| |||..
BPUM_0708___c 226 GAAGTAGATGTGATGATTATCACAGCTGCGACGGAAA--CGACACTTTTA 273
BSNT_01275___ 272 AG-GAAGCGCT--AAGAGCAGGAATTGCCCACTATTTGATCAAACCCGTA 318
|| ||.||.|| ||.| .|||.|.|..||.|||||.||||||||.||.
BPUM_0708___c 274 AGAGACGCCCTTCAATA--CGGAGTGGTTCATTATTTAATCAAACCAGTG 321
BSNT_01275___ 319 ACGGCTGACAAGTTCAGGCAGGTGCTGCTT-----CAGTATAA--AGAAA 361
||.||..|.|||||...|||.|| || .|.||||| ||||.
BPUM_0708___c 322 ACTGCACAAAAGTTTGCGCAAGT-----TTTAACGGAATATAAAGAGAAG 366
BSNT_01275___ 362 AAAGGAAGCTGCTCATGTCTCAGCCGGAGGTCAGCCAATCCATGATCGAC 411
|||| |..||.|||..||..||...||.||||..|||.|.|||||.||.
BPUM_0708___c 367 AAAG--ACATGATCAATTCCAAGGATGAAGTCAATCAAACGATGATTGAT 414
BSNT_01275___ 412 CATATTTTTGGGAACAG-TG--TGAAGA--CA---------GCTTTGCCG 447
....||||||| |||| || .||||| || |.| |
BPUM_0708___c 415 TTGTTTTTTGG--ACAGATGCAAGAAGAACCAAAGGAAAAGGGT-----G 457
BSNT_01275___ 448 GCAGAGGATTTGCCGACTGGCATTAATTC---GA--TT--ACACTGCGAA 490
.|||| ||..||||.||.||.||.||||| || || |||..|.|||
BPUM_0708___c 458 ACAGA-GACCTGCCTACAGGGATCAATTCACTGACCTTGGACAAGGTGAA 506
BSNT_01275___ 491 AA--ATTAAGGAAGCGCTTCAGACTGCGTCAGAA-----GGATTGACAGC 533
|| .|.|..||| |||| |||| ||||| .||||
BPUM_0708___c 507 AACGTTGATAGAA-----TCAG--------AGAATGATGGGATT-TCAGC 542
BSNT_01275___ 534 GGAGGAACTTGGGGAAAAAATGGGGGCGTCACGAACAACTGCCCGCCGTT 583
.||.|||||.||.||||||||||||||.|||||.|||||.||..|.||.|
BPUM_0708___c 543 AGAAGAACTCGGAGAAAAAATGGGGGCATCACGCACAACAGCGAGGCGGT 592
BSNT_01275___ 584 ATGCCGAGTATCTTGTGTCAAAGGAAGAA-GCAAGAGCCGAGCTTGAATA 632
|.|..||||||||.|||.|||..|.|||| || .|.||.||.||||..||
BPUM_0708___c 593 ACGTGGAGTATCTAGTGACAACTGGAGAATGC-CGGGCAGAACTTGCGTA 641
BSNT_01275___ 633 CGGGATTATCGGCAGGCCGGAGAGAAAATATTAT-TTG-----------G 670
.||.||.||.|||||.||.|||.||||||||||| .|| |
BPUM_0708___c 642 TGGAATCATTGGCAGACCAGAGCGAAAATATTATCCTGCCAAAAAGCAAG 691
BSNT_01275___ 671 CGGCGGATTAG 681
|||.|..|||.
BPUM_0708___c 692 CGGAGTCTTAA 702
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